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[doc] add FastFold (#1766)

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21
README-zh-Hans.md
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@ -56,7 +56,7 @@
<li> <li>
<a href="#Colossal-AI-in-the-Real-World">Colossal-AI 成功案例</a> <a href="#Colossal-AI-in-the-Real-World">Colossal-AI 成功案例</a>
<ul> <ul>
<li><a href="#xTrimoMultimer">xTrimoMultimer: 蛋白质单体与复合物结构预测</a></li> <li><a href="#生物医药">生物医药: 加速AlphaFold蛋白质结构预测</a></li>
</ul> </ul>
</li> </li>
<li> <li>
@ -105,7 +105,7 @@ Colossal-AI 为您提供了一系列并行组件。我们的目标是让您的
- 推理 - 推理
- [Energon-AI](https://github.com/hpcaitech/EnergonAI) - [Energon-AI](https://github.com/hpcaitech/EnergonAI)
- Colossal-AI 成功案例 - Colossal-AI 成功案例
- [xTrimoMultimer: 蛋白质单体与复合物结构预测](https://github.com/biomap-research/xTrimoMultimer) - 生物医药: [FastFold](https://github.com/hpcaitech/FastFold) 加速蛋白质结构预测 AlphaFold 训练与推理
<p align="right">(<a href="#top">返回顶端</a>)</p> <p align="right">(<a href="#top">返回顶端</a>)</p>
## 并行训练样例展示 ## 并行训练样例展示
@ -178,7 +178,7 @@ Colossal-AI 为您提供了一系列并行组件。我们的目标是让您的
- 用相同的硬件训练34倍大的模型 - 用相同的硬件训练34倍大的模型
<p align="right">(<a href="#top">back to top</a>)</p> <p align="right">(<a href="#top">返回顶端</a>)</p>
## 推理 (Energon-AI) 样例展示 ## 推理 (Energon-AI) 样例展示
@ -196,19 +196,26 @@ Colossal-AI 为您提供了一系列并行组件。我们的目标是让您的
- [OPT推理服务](https://service.colossalai.org/opt): 无需注册，免费体验1750亿参数OPT在线推理服务 - [OPT推理服务](https://service.colossalai.org/opt): 无需注册，免费体验1750亿参数OPT在线推理服务
<p align="right">(<a href="#top">back to top</a>)</p> <p align="right">(<a href="#top">返回顶端</a>)</p>
## Colossal-AI 成功案例 ## Colossal-AI 成功案例
### 生物医药
加速 [AlphaFold](https://alphafold.ebi.ac.uk/) 蛋白质结构预测
<p id="FastFold" align="center">
<img src="https://raw.githubusercontent.com/hpcaitech/public_assets/main/colossalai/img/FastFold.jpg" width=800/>
</p>
- [FastFold](https://github.com/hpcaitech/FastFold): 加速AlphaFold训练与推理、数据前处理、推理序列长度超过10000残基
### xTrimoMultimer: 蛋白质单体与复合物结构预测
<p id="xTrimoMultimer" align="center"> <p id="xTrimoMultimer" align="center">
<img src="https://raw.githubusercontent.com/hpcaitech/public_assets/main/colossalai/img/xTM_Prediction.jpg" width=380/>
<p></p>
<img src="https://raw.githubusercontent.com/hpcaitech/public_assets/main/colossalai/img/xTrimoMultimer_Table.jpg" width=800/> <img src="https://raw.githubusercontent.com/hpcaitech/public_assets/main/colossalai/img/xTrimoMultimer_Table.jpg" width=800/>
</p> </p>
- [xTrimoMultimer](https://github.com/biomap-research/xTrimoMultimer): 11倍加速蛋白质单体与复合物结构预测 - [xTrimoMultimer](https://github.com/biomap-research/xTrimoMultimer): 11倍加速蛋白质单体与复合物结构预测
<p align="right">(<a href="#top">返回顶端</a>)</p>
## 安装 ## 安装

19
README.md
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@ -56,7 +56,7 @@
<li> <li>
<a href="#Colossal-AI-in-the-Real-World">Colossal-AI for Real World Applications</a> <a href="#Colossal-AI-in-the-Real-World">Colossal-AI for Real World Applications</a>
<ul> <ul>
<li><a href="#xTrimoMultimer">xTrimoMultimer: Accelerating Protein Monomer and Multimer Structure Prediction</a></li> <li><a href="#Biomedicine">Biomedicine: Acceleration of AlphaFold Protein Structure</a></li>
</ul> </ul>
</li> </li>
<li> <li>
@ -111,7 +111,7 @@ distributed training and inference in a few lines.
- [Energon-AI](https://github.com/hpcaitech/EnergonAI) - [Energon-AI](https://github.com/hpcaitech/EnergonAI)
- Colossal-AI in the Real World - Colossal-AI in the Real World
- [xTrimoMultimer](https://github.com/biomap-research/xTrimoMultimer): Accelerating Protein Monomer and Multimer Structure Prediction - Biomedicine: [FastFold](https://github.com/hpcaitech/FastFold) accelerates training and inference of AlphaFold protein structure
<p align="right">(<a href="#top">back to top</a>)</p> <p align="right">(<a href="#top">back to top</a>)</p>
## Parallel Training Demo ## Parallel Training Demo
@ -202,14 +202,21 @@ Please visit our [documentation](https://www.colossalai.org/) and [examples](htt
## Colossal-AI in the Real World ## Colossal-AI in the Real World
### xTrimoMultimer: Accelerating Protein Monomer and Multimer Structure Prediction ### Biomedicine
Acceleration of [AlphaFold Protein Structure](https://alphafold.ebi.ac.uk/)
<p id="FastFold" align="center">
<img src="https://raw.githubusercontent.com/hpcaitech/public_assets/main/colossalai/img/FastFold.jpg" width=800/>
</p>
- [FastFold](https://github.com/hpcaitech/FastFold): accelerating training and inference on GPU Clusters, faster data processing, inference sequence containing more than 10000 residues.
<p id="xTrimoMultimer" align="center"> <p id="xTrimoMultimer" align="center">
<img src="https://raw.githubusercontent.com/hpcaitech/public_assets/main/colossalai/img/xTM_Prediction.jpg" width=380/>
<p></p>
<img src="https://raw.githubusercontent.com/hpcaitech/public_assets/main/colossalai/img/xTrimoMultimer_Table.jpg" width=800/> <img src="https://raw.githubusercontent.com/hpcaitech/public_assets/main/colossalai/img/xTrimoMultimer_Table.jpg" width=800/>
</p> </p>
- [xTrimoMultimer](https://github.com/biomap-research/xTrimoMultimer): accelerating structure prediction of protein monomers and multimer by 11x - [xTrimoMultimer](https://github.com/biomap-research/xTrimoMultimer): accelerating structure prediction of protein monomers and multimer by 11x.
<p align="right">(<a href="#top">back to top</a>)</p> <p align="right">(<a href="#top">back to top</a>)</p>