Commit Graph

39 Commits

Author SHA1 Message Date
Boyuan Yao
7a58dc5ad2
Update metainfo patch branch (#2517)
* init

* rename and remove useless func

* basic chunk

* add evoformer

* align evoformer

* add meta

* basic chunk

* basic memory

* finish basic inference memory estimation

* finish memory estimation

* fix bug

* finish memory estimation

* add part of index tracer

* finish basic index tracer

* add doc string

* add doc str

* polish code

* polish code

* update active log

* polish code

* add possible region search

* finish region search loop

* finish chunk define

* support new op

* rename index tracer

* finishi codegen on msa

* redesign index tracer, add source and change compute

* pass outproduct mean

* code format

* code format

* work with outerproductmean and msa

* code style

* code style

* code style

* code style

* change threshold

* support check_index_duplicate

* support index dupilictae and update loop

* support output

* update memory estimate

* optimise search

* fix layernorm

* move flow tracer

* refactor flow tracer

* format code

* refactor flow search

* code style

* adapt codegen to prepose node

* code style

* remove abandoned function

* remove flow tracer

* code style

* code style

* reorder nodes

* finish node reorder

* update run

* code style

* add chunk select class

* add chunk select

* code style

* add chunksize in emit, fix bug in reassgin shape

* code style

* turn off print mem

* add evoformer openfold init

* init openfold

* add benchmark

* add print

* code style

* code style

* init openfold

* update openfold

* align openfold

* use max_mem to control stratge

* update source add

* add reorder in mem estimator

* improve reorder efficeincy

* support ones_like, add prompt if fit mode search fail

* fix a bug in ones like, dont gen chunk if dim size is 1

* fix bug again

* update min memory stratege, reduce mem usage by 30%

* last version of benchmark

* refactor structure

* restruct dir

* update test

* rename

* take apart chunk code gen

* close mem and code print

* code format

* rename ambiguous variable

* seperate flow tracer

* seperate input node dim search

* seperate prepose_nodes

* seperate non chunk input

* seperate reorder

* rename

* ad reorder graph

* seperate trace flow

* code style

* code style

* fix typo

* set benchmark

* rename test

* update codegen test

* Fix state_dict key missing issue of the ZeroDDP (#2363)

* Fix state_dict output for ZeroDDP duplicated parameters

* Rewrite state_dict based on get_static_torch_model

* Modify get_static_torch_model to be compatible with the lower version (ZeroDDP)

* update codegen test

* update codegen test

* add chunk search test

* code style

* add available

* [hotfix] fix gpt gemini example (#2404)

* [hotfix] fix gpt gemini example

* [example] add new assertions

* remove autochunk_available

* [workflow] added nightly release to pypi (#2403)

* add comments

* code style

* add doc for search chunk

* [doc] updated readme regarding pypi installation (#2406)

* add doc for search

* [doc] updated kernel-related optimisers' docstring (#2385)

* [doc] updated kernel-related optimisers' docstring

* polish doc

* rename trace_index to trace_indice

* rename function from index to indice

* rename

* rename in doc

* [polish] polish code for get_static_torch_model (#2405)

* [gemini] polish code

* [testing] remove code

* [gemini] make more robust

* rename

* rename

* remove useless function

* [worfklow] added coverage test (#2399)

* [worfklow] added coverage test

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* add doc for trace indice

* [docker] updated Dockerfile and release workflow (#2410)

* add doc

* update doc

* add available

* change imports

* add test in import

* [workflow] refactored the example check workflow (#2411)

* [workflow] refactored the example check workflow

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* Update parallel_context.py (#2408)

* [hotfix] add DISTPAN argument for benchmark (#2412)

* change the benchmark config file

* change config

* revert config file

* rename distpan to distplan

* [workflow] added precommit check for code consistency (#2401)

* [workflow] added precommit check for code consistency

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* adapt new fx

* [workflow] added translation for non-english comments (#2414)

* [setup] refactored setup.py for dependency graph (#2413)

* change import

* update doc

* [workflow] auto comment if precommit check fails (#2417)

* [hotfix] add norm clearing for the overflow step (#2416)

* [examples] adding tflops to PaLM (#2365)

* [workflow]auto comment with test coverage report (#2419)

* [workflow]auto comment with test coverage report

* polish code

* polish yaml

* [doc] added documentation for CI/CD (#2420)

* [doc] added documentation for CI/CD

* polish markdown

* polish markdown

* polish markdown

* [example] removed duplicated stable diffusion example (#2424)

* [zero] add inference mode and its unit test (#2418)

* [workflow] report test coverage even if below threshold (#2431)

* [example] improved the clarity yof the example readme (#2427)

* [example] improved the clarity yof the example readme

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* [ddp] add is_ddp_ignored (#2434)

[ddp] rename to is_ddp_ignored

* [workflow] make test coverage report collapsable (#2436)

* [autoparallel] add shard option (#2423)

* [fx] allow native ckpt trace and codegen. (#2438)

* [cli] provided more details if colossalai run fail (#2442)

* [autoparallel] integrate device mesh initialization into autoparallelize (#2393)

* [autoparallel] integrate device mesh initialization into autoparallelize

* add megatron solution

* update gpt autoparallel examples with latest api

* adapt beta value to fit the current computation cost

* [zero] fix state_dict and load_state_dict for ddp ignored parameters (#2443)

* [ddp] add is_ddp_ignored

[ddp] rename to is_ddp_ignored

* [zero] fix state_dict and load_state_dict

* fix bugs

* [zero] update unit test for ZeroDDP

* [example] updated the hybrid parallel tutorial (#2444)

* [example] updated the hybrid parallel tutorial

* polish code

* [zero] add warning for ignored parameters (#2446)

* [example] updated large-batch optimizer tutorial (#2448)

* [example] updated large-batch optimizer tutorial

* polish code

* polish code

* [example] fixed seed error in train_dreambooth_colossalai.py (#2445)

* [workflow] fixed the on-merge condition check (#2452)

* [workflow] automated the compatiblity test (#2453)

* [workflow] automated the compatiblity test

* polish code

* [autoparallel] update binary elementwise handler (#2451)

* [autoparallel] update binary elementwise handler

* polish

* [workflow] automated bdist wheel build (#2459)

* [workflow] automated bdist wheel build

* polish workflow

* polish readme

* polish readme

* Fix False warning in initialize.py (#2456)

* Update initialize.py

* pre-commit run check

* [examples] update autoparallel tutorial demo (#2449)

* [examples] update autoparallel tutorial demo

* add test_ci.sh

* polish

* add conda yaml

* [cli] fixed hostname mismatch error (#2465)

* [example] integrate autoparallel demo with CI (#2466)

* [example] integrate autoparallel demo with CI

* polish code

* polish code

* polish code

* polish code

* [zero] low level optim supports ProcessGroup (#2464)

* [example] update vit ci script (#2469)

* [example] update vit ci script

* [example] update requirements

* [example] update requirements

* [example] integrate seq-parallel tutorial with CI (#2463)

* [zero] polish low level optimizer (#2473)

* polish pp middleware (#2476)

Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>

* [example] update gpt gemini example ci test (#2477)

* [zero] add unit test for low-level zero init (#2474)

* [workflow] fixed the skip condition of  example weekly check workflow (#2481)

* [example] stable diffusion add roadmap

* add dummy test_ci.sh

* [example] stable diffusion add roadmap (#2482)

* [CI] add test_ci.sh for palm, opt and gpt (#2475)

* polish code

* [example] titans for gpt

* polish readme

* remove license

* polish code

* update readme

* [example] titans for gpt (#2484)

* [autoparallel] support origin activation ckpt on autoprallel system (#2468)

* [autochunk] support evoformer tracer (#2485)

support full evoformer tracer, which is a main module of alphafold. previously we just support a simplifed version of it.
1. support some evoformer's op in fx
2. support evoformer test
3. add repos for test code

* [example] fix requirements (#2488)

* [zero] add unit testings for hybrid parallelism  (#2486)

* [hotfix] gpt example titans bug #2493

* polish code and fix dataloader bugs

* [hotfix] gpt example titans bug #2493 (#2494)

* [fx] allow control of ckpt_codegen init (#2498)

* [fx] allow control of ckpt_codegen init

Currently in ColoGraphModule, ActivationCheckpointCodeGen will be set automatically in __init__. But other codegen can't be set if so. 
So I add an arg to control whether to set ActivationCheckpointCodeGen in __init__.

* code style

* [example] dreambooth example

* add test_ci.sh to dreambooth

* [autochunk] support autochunk on evoformer (#2497)

* Revert "Update parallel_context.py (#2408)"

This reverts commit 7d5640b9db.

* add avg partition (#2483)

Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>

* [auto-chunk] support extramsa (#3) (#2504)

* [utils] lazy init. (#2148)

* [utils] lazy init.

* [utils] remove description.

* [utils] complete.

* [utils] finalize.

* [utils] fix names.

* [autochunk] support parsing blocks (#2506)

* [zero] add strict ddp mode (#2508)

* [zero] add strict ddp mode

* [polish] add comments for strict ddp mode

* [zero] fix test error

* [doc] update opt and tutorial links (#2509)

* [workflow] fixed changed file detection (#2515)

Co-authored-by: oahzxl <xuanlei.zhao@gmail.com>
Co-authored-by: eric8607242 <e0928021388@gmail.com>
Co-authored-by: HELSON <c2h214748@gmail.com>
Co-authored-by: Frank Lee <somerlee.9@gmail.com>
Co-authored-by: Haofan Wang <haofanwang.ai@gmail.com>
Co-authored-by: Jiarui Fang <fangjiarui123@gmail.com>
Co-authored-by: ZijianYY <119492445+ZijianYY@users.noreply.github.com>
Co-authored-by: YuliangLiu0306 <72588413+YuliangLiu0306@users.noreply.github.com>
Co-authored-by: Super Daniel <78588128+super-dainiu@users.noreply.github.com>
Co-authored-by: ver217 <lhx0217@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang97@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>
Co-authored-by: oahzxl <43881818+oahzxl@users.noreply.github.com>
Co-authored-by: binmakeswell <binmakeswell@gmail.com>
Co-authored-by: Fazzie-Maqianli <55798671+Fazziekey@users.noreply.github.com>
Co-authored-by: アマデウス <kurisusnowdeng@users.noreply.github.com>
2023-01-27 09:52:21 +08:00
Jiarui Fang
4165eabb1e
[hotfix] remove potiential circle import (#1307)
* make it faster

* [hotfix] remove circle import
2022-07-14 13:44:26 +08:00
Frank Lee
91a5999825
[ddp] supported customized torch ddp configuration (#1123) 2022-06-15 18:11:53 +08:00
Frank Lee
3d10be33bd
[cudnn] set False to cudnn benchmark by default (#1063) 2022-06-03 17:58:06 +08:00
Frank Lee
7a64fae33a
[doc] improved error messages in initialize (#872) 2022-04-26 10:00:03 +08:00
LuGY
c1e8d2001e
modefied the pp build for ckpt adaptation (#803) 2022-04-24 12:23:16 +08:00
Jiarui Fang
227d1cd4b3
[gemini] APIs to set cpu memory capacity (#809) 2022-04-19 16:05:22 +08:00
Jiarui Fang
681addb512
[refactor] moving grad acc logic to engine (#804) 2022-04-19 14:03:21 +08:00
ver217
097772546e fix initialize about zero 2022-04-13 19:10:21 +08:00
Frank Lee
04ff5ea546
[utils] support detection of number of processes on current node (#723) 2022-04-12 09:28:19 +08:00
YuliangLiu0306
0ed7042f42
[pipeline] refactor pipeline (#679)
* refactor pipeline---put runtime schedule into engine.

* add type hint for schedule Optional[BaseSchedule]

* preprocess schedule during engine initializing

* infer pipeline schedule params from config
2022-04-07 15:54:14 +08:00
YuliangLiu0306
ade05a5d83
[refactor] pipeline, put runtime schedule into engine. (#627) 2022-04-03 20:46:45 +08:00
Liang Bowen
ec5086c49c Refactored docstring to google style 2022-03-29 17:17:47 +08:00
Jiarui Fang
a445e118cf
[polish] polish singleton and global context (#500) 2022-03-23 18:03:39 +08:00
HELSON
7544347145
[MOE] add unitest for MOE experts layout, gradient handler and kernel (#469) 2022-03-21 13:35:04 +08:00
ver217
a241f61b34
[zero] Update initialize for ZeRO (#458)
* polish code

* shard strategy receive pg in shard() / gather()

* update zero engine

* polish code
2022-03-18 16:18:31 +08:00
ver217
642846d6f9
update sharded optim and fix zero init ctx (#457) 2022-03-18 15:44:47 +08:00
Jiarui Fang
e2e9f82588
Revert "[zero] update sharded optim and fix zero init ctx" (#456)
* Revert "polish code"

This reverts commit 8cf7ff08cf.

* Revert "rename variables"

This reverts commit e99af94ab8.

* Revert "remove surplus imports"

This reverts commit 46add4a5c5.

* Revert "update sharded optim and fix zero init ctx"

This reverts commit 57567ee768.
2022-03-18 15:22:43 +08:00
ver217
57567ee768 update sharded optim and fix zero init ctx 2022-03-18 14:25:25 +08:00
Jiarui Fang
496cbb0760
[hotfix] fix initialize bug with zero (#442) 2022-03-17 13:16:22 +08:00
Jiarui Fang
640a6cd304
[refactory] refactory the initialize method for new zero design (#431) 2022-03-16 19:29:37 +08:00
Frank Lee
e79ea44247
[fp16] refactored fp16 optimizer (#392) 2022-03-15 10:05:38 +08:00
Frank Lee
6a3188167c set criterion as optional in colossalai initialize (#336) 2022-03-11 15:50:28 +08:00
Frank Lee
e17e54e32a added buffer sync to naive amp model wrapper (#291) 2022-03-11 15:50:28 +08:00
Jie Zhu
f867365aba bug fix: pass hook_list to engine (#273)
* bug fix: pass hook_list to engine

* change parameter name
2022-03-11 15:50:28 +08:00
Jiarui Fang
5a560a060a Feature/zero (#279)
* add zero1 (#209)

* add zero1

* add test zero1

* update zero stage 1 develop (#212)

* Implement naive zero3 (#240)

* naive zero3 works well

* add zero3 param manager

* add TODOs in comments

* add gather full param ctx

* fix sub module streams

* add offload

* fix bugs of hook and add unit tests

* fix bugs of hook and add unit tests (#252)

* add gather full param ctx

* fix sub module streams

* add offload

* fix bugs of hook and add unit tests

* polish code and add state dict hook

* fix bug

* update unit test

* refactor reconstructed zero code

* clip_grad support zero3 and add unit test

* add unit test for Zero3ParameterManager

* [WIP] initialize the shard param class

* [WIP] Yet another sharded model implementation (#274)

* [WIP] initialize the shard param class

* [WIP] Yes another implementation of shardModel. Using a better hook method.

* torch.concat -> torch.cat

* fix test_zero_level_1.py::test_zero_level_1 unitest

* remove deepspeed implementation and refactor for the reconstructed zero module

* polish zero dp unittests

Co-authored-by: ver217 <lhx0217@gmail.com>
Co-authored-by: Frank Lee <somerlee.9@gmail.com>
2022-03-11 15:50:28 +08:00
Frank Lee
765db512b5
fixed ddp bug on torch 1.8 (#194) 2022-01-28 15:14:04 +08:00
HELSON
0f8c7f9804
Fixed docstring in colossalai (#171) 2022-01-21 10:44:30 +08:00
Frank Lee
e2089c5c15
adapted for sequence parallel (#163) 2022-01-20 13:44:51 +08:00
HELSON
dceae85195
Added MoE parallel (#127) 2022-01-07 15:08:36 +08:00
ver217
293fb40c42
add scatter/gather optim for pipeline (#123) 2022-01-07 13:22:22 +08:00
ver217
96780e6ee4
Optimize pipeline schedule (#94)
* add pipeline shared module wrapper and update load batch

* added model parallel process group for amp and clip grad (#86)

* added model parallel process group for amp and clip grad

* update amp and clip with model parallel process group

* remove pipeline_prev/next group (#88)

* micro batch offload

* optimize pipeline gpu memory usage

* pipeline can receive tensor shape (#93)

* optimize pipeline gpu memory usage

* fix grad accumulation step counter

* rename classes and functions

Co-authored-by: Frank Lee <somerlee.9@gmail.com>
2021-12-30 15:56:46 +08:00
アマデウス
0fedef4f3c
Layer integration (#83)
* integrated parallel layers for ease of building models

* integrated 2.5d layers

* cleaned codes and unit tests

* added log metric by step hook; updated imagenet benchmark; fixed some bugs

* reworked initialization; cleaned codes

Co-authored-by: BoxiangW <45734921+BoxiangW@users.noreply.github.com>
2021-12-27 15:04:32 +08:00
ver217
8f02a88db2
add interleaved pipeline, fix naive amp and update pipeline model initializer (#80) 2021-12-20 23:26:19 +08:00
Frank Lee
35813ed3c4
update examples and sphnix docs for the new api (#63) 2021-12-13 22:07:01 +08:00
ver217
7d3711058f
fix zero3 fp16 and add zero3 model context (#62) 2021-12-10 17:48:50 +08:00
Frank Lee
da01c234e1
Develop/experiments (#59)
* Add gradient accumulation, fix lr scheduler

* fix FP16 optimizer and adapted torch amp with tensor parallel (#18)

* fixed bugs in compatibility between torch amp and tensor parallel and performed some minor fixes

* fixed trainer

* Revert "fixed trainer"

This reverts commit 2e0b0b7699.

* improved consistency between trainer, engine and schedule (#23)

Co-authored-by: 1SAA <c2h214748@gmail.com>

* Split conv2d, class token, positional embedding in 2d, Fix random number in ddp
Fix convergence in cifar10, Imagenet1000

* Integrate 1d tensor parallel in Colossal-AI (#39)

* fixed 1D and 2D convergence (#38)

* optimized 2D operations

* fixed 1D ViT convergence problem

* Feature/ddp (#49)

* remove redundancy func in setup (#19) (#20)

* use env to control the language of doc (#24) (#25)

* Support TP-compatible Torch AMP and Update trainer API (#27)

* Add gradient accumulation, fix lr scheduler

* fix FP16 optimizer and adapted torch amp with tensor parallel (#18)

* fixed bugs in compatibility between torch amp and tensor parallel and performed some minor fixes

* fixed trainer

* Revert "fixed trainer"

This reverts commit 2e0b0b7699.

* improved consistency between trainer, engine and schedule (#23)

Co-authored-by: 1SAA <c2h214748@gmail.com>

Co-authored-by: 1SAA <c2h214748@gmail.com>
Co-authored-by: ver217 <lhx0217@gmail.com>

* add an example of ViT-B/16 and remove w_norm clipping in LAMB (#29)

* add explanation for ViT example (#35) (#36)

* support torch ddp

* fix loss accumulation

* add log for ddp

* change seed

* modify timing hook

Co-authored-by: Frank Lee <somerlee.9@gmail.com>
Co-authored-by: 1SAA <c2h214748@gmail.com>
Co-authored-by: binmakeswell <binmakeswell@gmail.com>

* Feature/pipeline (#40)

* remove redundancy func in setup (#19) (#20)

* use env to control the language of doc (#24) (#25)

* Support TP-compatible Torch AMP and Update trainer API (#27)

* Add gradient accumulation, fix lr scheduler

* fix FP16 optimizer and adapted torch amp with tensor parallel (#18)

* fixed bugs in compatibility between torch amp and tensor parallel and performed some minor fixes

* fixed trainer

* Revert "fixed trainer"

This reverts commit 2e0b0b7699.

* improved consistency between trainer, engine and schedule (#23)

Co-authored-by: 1SAA <c2h214748@gmail.com>

Co-authored-by: 1SAA <c2h214748@gmail.com>
Co-authored-by: ver217 <lhx0217@gmail.com>

* add an example of ViT-B/16 and remove w_norm clipping in LAMB (#29)

* add explanation for ViT example (#35) (#36)

* optimize communication of pipeline parallel

* fix grad clip for pipeline

Co-authored-by: Frank Lee <somerlee.9@gmail.com>
Co-authored-by: 1SAA <c2h214748@gmail.com>
Co-authored-by: binmakeswell <binmakeswell@gmail.com>

* optimized 3d layer to fix slow computation ; tested imagenet performance with 3d; reworked lr_scheduler config definition; fixed launch args; fixed some printing issues; simplified apis of 3d layers (#51)

* Update 2.5d layer code to get a similar accuracy on imagenet-1k dataset

* update api for better usability (#58)

update api for better usability

Co-authored-by: 1SAA <c2h214748@gmail.com>
Co-authored-by: ver217 <lhx0217@gmail.com>
Co-authored-by: puck_WCR <46049915+WANG-CR@users.noreply.github.com>
Co-authored-by: binmakeswell <binmakeswell@gmail.com>
Co-authored-by: アマデウス <kurisusnowdeng@users.noreply.github.com>
Co-authored-by: BoxiangW <45734921+BoxiangW@users.noreply.github.com>
2021-12-09 15:08:29 +08:00
Frank Lee
3defa32aee
Support TP-compatible Torch AMP and Update trainer API (#27)
* Add gradient accumulation, fix lr scheduler

* fix FP16 optimizer and adapted torch amp with tensor parallel (#18)

* fixed bugs in compatibility between torch amp and tensor parallel and performed some minor fixes

* fixed trainer

* Revert "fixed trainer"

This reverts commit 2e0b0b7699.

* improved consistency between trainer, engine and schedule (#23)

Co-authored-by: 1SAA <c2h214748@gmail.com>

Co-authored-by: 1SAA <c2h214748@gmail.com>
Co-authored-by: ver217 <lhx0217@gmail.com>
2021-11-18 19:45:06 +08:00
zbian
404ecbdcc6 Migrated project 2021-10-28 18:21:23 +02:00