Files
ColossalAI/colossalai/autochunk/search_chunk.py
Boyuan Yao 7a58dc5ad2 Update metainfo patch branch (#2517)
* init

* rename and remove useless func

* basic chunk

* add evoformer

* align evoformer

* add meta

* basic chunk

* basic memory

* finish basic inference memory estimation

* finish memory estimation

* fix bug

* finish memory estimation

* add part of index tracer

* finish basic index tracer

* add doc string

* add doc str

* polish code

* polish code

* update active log

* polish code

* add possible region search

* finish region search loop

* finish chunk define

* support new op

* rename index tracer

* finishi codegen on msa

* redesign index tracer, add source and change compute

* pass outproduct mean

* code format

* code format

* work with outerproductmean and msa

* code style

* code style

* code style

* code style

* change threshold

* support check_index_duplicate

* support index dupilictae and update loop

* support output

* update memory estimate

* optimise search

* fix layernorm

* move flow tracer

* refactor flow tracer

* format code

* refactor flow search

* code style

* adapt codegen to prepose node

* code style

* remove abandoned function

* remove flow tracer

* code style

* code style

* reorder nodes

* finish node reorder

* update run

* code style

* add chunk select class

* add chunk select

* code style

* add chunksize in emit, fix bug in reassgin shape

* code style

* turn off print mem

* add evoformer openfold init

* init openfold

* add benchmark

* add print

* code style

* code style

* init openfold

* update openfold

* align openfold

* use max_mem to control stratge

* update source add

* add reorder in mem estimator

* improve reorder efficeincy

* support ones_like, add prompt if fit mode search fail

* fix a bug in ones like, dont gen chunk if dim size is 1

* fix bug again

* update min memory stratege, reduce mem usage by 30%

* last version of benchmark

* refactor structure

* restruct dir

* update test

* rename

* take apart chunk code gen

* close mem and code print

* code format

* rename ambiguous variable

* seperate flow tracer

* seperate input node dim search

* seperate prepose_nodes

* seperate non chunk input

* seperate reorder

* rename

* ad reorder graph

* seperate trace flow

* code style

* code style

* fix typo

* set benchmark

* rename test

* update codegen test

* Fix state_dict key missing issue of the ZeroDDP (#2363)

* Fix state_dict output for ZeroDDP duplicated parameters

* Rewrite state_dict based on get_static_torch_model

* Modify get_static_torch_model to be compatible with the lower version (ZeroDDP)

* update codegen test

* update codegen test

* add chunk search test

* code style

* add available

* [hotfix] fix gpt gemini example (#2404)

* [hotfix] fix gpt gemini example

* [example] add new assertions

* remove autochunk_available

* [workflow] added nightly release to pypi (#2403)

* add comments

* code style

* add doc for search chunk

* [doc] updated readme regarding pypi installation (#2406)

* add doc for search

* [doc] updated kernel-related optimisers' docstring (#2385)

* [doc] updated kernel-related optimisers' docstring

* polish doc

* rename trace_index to trace_indice

* rename function from index to indice

* rename

* rename in doc

* [polish] polish code for get_static_torch_model (#2405)

* [gemini] polish code

* [testing] remove code

* [gemini] make more robust

* rename

* rename

* remove useless function

* [worfklow] added coverage test (#2399)

* [worfklow] added coverage test

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* add doc for trace indice

* [docker] updated Dockerfile and release workflow (#2410)

* add doc

* update doc

* add available

* change imports

* add test in import

* [workflow] refactored the example check workflow (#2411)

* [workflow] refactored the example check workflow

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* Update parallel_context.py (#2408)

* [hotfix] add DISTPAN argument for benchmark (#2412)

* change the benchmark config file

* change config

* revert config file

* rename distpan to distplan

* [workflow] added precommit check for code consistency (#2401)

* [workflow] added precommit check for code consistency

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* adapt new fx

* [workflow] added translation for non-english comments (#2414)

* [setup] refactored setup.py for dependency graph (#2413)

* change import

* update doc

* [workflow] auto comment if precommit check fails (#2417)

* [hotfix] add norm clearing for the overflow step (#2416)

* [examples] adding tflops to PaLM (#2365)

* [workflow]auto comment with test coverage report (#2419)

* [workflow]auto comment with test coverage report

* polish code

* polish yaml

* [doc] added documentation for CI/CD (#2420)

* [doc] added documentation for CI/CD

* polish markdown

* polish markdown

* polish markdown

* [example] removed duplicated stable diffusion example (#2424)

* [zero] add inference mode and its unit test (#2418)

* [workflow] report test coverage even if below threshold (#2431)

* [example] improved the clarity yof the example readme (#2427)

* [example] improved the clarity yof the example readme

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* [ddp] add is_ddp_ignored (#2434)

[ddp] rename to is_ddp_ignored

* [workflow] make test coverage report collapsable (#2436)

* [autoparallel] add shard option (#2423)

* [fx] allow native ckpt trace and codegen. (#2438)

* [cli] provided more details if colossalai run fail (#2442)

* [autoparallel] integrate device mesh initialization into autoparallelize (#2393)

* [autoparallel] integrate device mesh initialization into autoparallelize

* add megatron solution

* update gpt autoparallel examples with latest api

* adapt beta value to fit the current computation cost

* [zero] fix state_dict and load_state_dict for ddp ignored parameters (#2443)

* [ddp] add is_ddp_ignored

[ddp] rename to is_ddp_ignored

* [zero] fix state_dict and load_state_dict

* fix bugs

* [zero] update unit test for ZeroDDP

* [example] updated the hybrid parallel tutorial (#2444)

* [example] updated the hybrid parallel tutorial

* polish code

* [zero] add warning for ignored parameters (#2446)

* [example] updated large-batch optimizer tutorial (#2448)

* [example] updated large-batch optimizer tutorial

* polish code

* polish code

* [example] fixed seed error in train_dreambooth_colossalai.py (#2445)

* [workflow] fixed the on-merge condition check (#2452)

* [workflow] automated the compatiblity test (#2453)

* [workflow] automated the compatiblity test

* polish code

* [autoparallel] update binary elementwise handler (#2451)

* [autoparallel] update binary elementwise handler

* polish

* [workflow] automated bdist wheel build (#2459)

* [workflow] automated bdist wheel build

* polish workflow

* polish readme

* polish readme

* Fix False warning in initialize.py (#2456)

* Update initialize.py

* pre-commit run check

* [examples] update autoparallel tutorial demo (#2449)

* [examples] update autoparallel tutorial demo

* add test_ci.sh

* polish

* add conda yaml

* [cli] fixed hostname mismatch error (#2465)

* [example] integrate autoparallel demo with CI (#2466)

* [example] integrate autoparallel demo with CI

* polish code

* polish code

* polish code

* polish code

* [zero] low level optim supports ProcessGroup (#2464)

* [example] update vit ci script (#2469)

* [example] update vit ci script

* [example] update requirements

* [example] update requirements

* [example] integrate seq-parallel tutorial with CI (#2463)

* [zero] polish low level optimizer (#2473)

* polish pp middleware (#2476)

Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>

* [example] update gpt gemini example ci test (#2477)

* [zero] add unit test for low-level zero init (#2474)

* [workflow] fixed the skip condition of  example weekly check workflow (#2481)

* [example] stable diffusion add roadmap

* add dummy test_ci.sh

* [example] stable diffusion add roadmap (#2482)

* [CI] add test_ci.sh for palm, opt and gpt (#2475)

* polish code

* [example] titans for gpt

* polish readme

* remove license

* polish code

* update readme

* [example] titans for gpt (#2484)

* [autoparallel] support origin activation ckpt on autoprallel system (#2468)

* [autochunk] support evoformer tracer (#2485)

support full evoformer tracer, which is a main module of alphafold. previously we just support a simplifed version of it.
1. support some evoformer's op in fx
2. support evoformer test
3. add repos for test code

* [example] fix requirements (#2488)

* [zero] add unit testings for hybrid parallelism  (#2486)

* [hotfix] gpt example titans bug #2493

* polish code and fix dataloader bugs

* [hotfix] gpt example titans bug #2493 (#2494)

* [fx] allow control of ckpt_codegen init (#2498)

* [fx] allow control of ckpt_codegen init

Currently in ColoGraphModule, ActivationCheckpointCodeGen will be set automatically in __init__. But other codegen can't be set if so. 
So I add an arg to control whether to set ActivationCheckpointCodeGen in __init__.

* code style

* [example] dreambooth example

* add test_ci.sh to dreambooth

* [autochunk] support autochunk on evoformer (#2497)

* Revert "Update parallel_context.py (#2408)"

This reverts commit 7d5640b9db.

* add avg partition (#2483)

Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>

* [auto-chunk] support extramsa (#3) (#2504)

* [utils] lazy init. (#2148)

* [utils] lazy init.

* [utils] remove description.

* [utils] complete.

* [utils] finalize.

* [utils] fix names.

* [autochunk] support parsing blocks (#2506)

* [zero] add strict ddp mode (#2508)

* [zero] add strict ddp mode

* [polish] add comments for strict ddp mode

* [zero] fix test error

* [doc] update opt and tutorial links (#2509)

* [workflow] fixed changed file detection (#2515)

Co-authored-by: oahzxl <xuanlei.zhao@gmail.com>
Co-authored-by: eric8607242 <e0928021388@gmail.com>
Co-authored-by: HELSON <c2h214748@gmail.com>
Co-authored-by: Frank Lee <somerlee.9@gmail.com>
Co-authored-by: Haofan Wang <haofanwang.ai@gmail.com>
Co-authored-by: Jiarui Fang <fangjiarui123@gmail.com>
Co-authored-by: ZijianYY <119492445+ZijianYY@users.noreply.github.com>
Co-authored-by: YuliangLiu0306 <72588413+YuliangLiu0306@users.noreply.github.com>
Co-authored-by: Super Daniel <78588128+super-dainiu@users.noreply.github.com>
Co-authored-by: ver217 <lhx0217@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang97@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>
Co-authored-by: oahzxl <43881818+oahzxl@users.noreply.github.com>
Co-authored-by: binmakeswell <binmakeswell@gmail.com>
Co-authored-by: Fazzie-Maqianli <55798671+Fazziekey@users.noreply.github.com>
Co-authored-by: アマデウス <kurisusnowdeng@users.noreply.github.com>
2023-01-27 09:52:21 +08:00

320 lines
12 KiB
Python

import copy
from typing import Dict, List, Tuple
from torch.fx.node import Node
from .estimate_memory import EstimateMemory
from .reorder_graph import ReorderGraph
from .select_chunk import SelectChunk
from .trace_flow import TraceFlow
from .trace_indice import TraceIndice
from .utils import get_logger, get_node_shape, is_non_compute_node, is_non_compute_node_except_placeholder
class SearchChunk(object):
"""
This is the core class for AutoChunk.
It defines the framework of the strategy of AutoChunk.
Chunks will be selected one by one utill search stops.
The chunk search is as follows:
1. find the peak memory node
2. find the max chunk region according to the peak memory node
3. find all possible chunk regions in the max chunk region
4. find the best chunk region for current status
5. goto 1
Attributes:
gm: graph model
print_mem (bool): print estimated memory
trace_index: trace the flow of every dim of every node to find all free dims
trace_flow: determine the region chunk strategy
reorder_graph: reorder nodes to improve chunk efficiency
estimate_memory: estimate memory with chunk
select_chunk: select the best chunk region
Args:
gm: graph model
max_memory (int): max memory in MB
print_mem (bool): print estimated memory
"""
def __init__(self, gm, max_memory=None, print_mem=False, print_progress=False) -> None:
self.print_mem = print_mem
self.print_progress = print_progress
self.trace_indice = TraceIndice(list(gm.graph.nodes))
self.estimate_memory = EstimateMemory()
self._init_trace()
self.trace_flow = TraceFlow(self.trace_indice)
self.reorder_graph = ReorderGraph(self.trace_indice)
self.select_chunk = SelectChunk(
self.trace_indice,
self.estimate_memory,
self.reorder_graph,
max_memory=max_memory,
)
def _init_trace(self) -> None:
"""
find the max trace range for every node
reduce the computation complexity of trace_indice
"""
# find all max ranges
active_nodes = self.estimate_memory.get_active_nodes(self.trace_indice.node_list)
cur_node_idx = len(self._get_free_var_idx())
max_chunk_region_list = []
while True:
max_chunk_region = self._search_max_chunk_region(active_nodes, cur_node_idx)
cur_node_idx = max_chunk_region[1]
if cur_node_idx == len(active_nodes) - 1:
break
max_chunk_region_list.append(max_chunk_region)
# nothing to limit for the first range
max_chunk_region_list = max_chunk_region_list[1:]
max_chunk_region_list[0] = (0, max_chunk_region_list[0][1])
# set trace range and do the trace
if self.print_progress:
get_logger().info("AutoChunk start tracing indice")
self.trace_indice.set_trace_range(max_chunk_region_list, active_nodes)
self.trace_indice.trace_indice()
def _find_peak_node(self, mem_peak: List) -> int:
max_value = max(mem_peak)
max_idx = mem_peak.index(max_value)
return max_idx
def _get_free_var_idx(self) -> List:
"""
Get free var index
Returns:
free_var_idx (List): all indexs of free vars
"""
free_var_idx = []
for idx, n in enumerate(self.trace_indice.node_list):
if n.op == "placeholder" and get_node_shape(n) is not None:
free_var_idx.append(idx)
return free_var_idx
def _search_max_chunk_region(self, active_node: List, peak_node_idx: int, chunk_regions: List = None) -> Tuple:
"""
Search max chunk region according to peak memory node
Chunk region starts extending from the peak node, stops where free var num is min
Args:
active_node (List): active node status for every node
peak_node_idx (int): peak memory node idx
chunk_regions (List): chunk region infos
Returns:
chunk_region_start (int)
chunk_region_end (int)
"""
free_vars = self._get_free_var_idx()
free_var_num = len(free_vars)
active_node_num = [len(i) for i in active_node]
min_active_node_num = min(active_node_num[free_var_num:])
threshold = max(free_var_num, min_active_node_num)
# from peak_node to free_var
inside_flag = False
chunk_region_start = free_var_num
for i in range(peak_node_idx, -1, -1):
if active_node_num[i] <= threshold:
inside_flag = True
if inside_flag and active_node_num[i] > threshold:
chunk_region_start = i + 1
break
# from peak_node to len-2
inside_flag = False
chunk_region_end = len(active_node) - 1
for i in range(peak_node_idx, len(active_node)):
if active_node_num[i] <= threshold:
inside_flag = True
if inside_flag and active_node_num[i] > threshold:
chunk_region_end = i
break
# avoid chunk regions overlap
if chunk_regions is not None:
for i in chunk_regions:
region = i["region"]
if chunk_region_start >= region[0] and chunk_region_end <= region[1]:
return None
elif (region[0] <= chunk_region_start <= region[1] and chunk_region_end > region[1]):
chunk_region_start = region[1] + 1
elif (region[0] <= chunk_region_end <= region[1] and chunk_region_start < region[0]):
chunk_region_end = region[0] - 1
return chunk_region_start, chunk_region_end
def _find_chunk_info(self, input_trace, output_trace, start_idx, end_idx) -> List:
"""
Find chunk info for a region.
We are given the region start and region end, and need to find out all chunk info for it.
We first loop every dim of start node and end node, to see if we can find dim pair,
which is linked in a flow and not computed.
If found, we then search flow in the whole region to find out all chunk infos.
Args:
input_trace (List): node's input trace in region
output_trace (List): node's output trace in region
start_idx (int): region start node index
end_idx (int): region end node index
Returns:
chunk_infos: possible regions found
"""
start_traces = input_trace[start_idx]
end_trace = output_trace[end_idx]
end_node = self.trace_indice.node_list[end_idx]
chunk_infos = []
for end_dim, _ in enumerate(end_trace["indice"]):
if len(start_traces) > 1:
continue
for start_node, start_trace in start_traces.items():
for start_dim, _ in enumerate(start_trace["indice"]):
# dim size cannot be 1
if (get_node_shape(end_node)[end_dim] == 1 or get_node_shape(start_node)[start_dim] == 1):
continue
# must have users
if len(end_node.users) == 0:
continue
# check index source align
if not self.trace_flow.check_index_source(start_dim, start_node, start_idx, end_dim, end_node):
continue
# check index copmute
if not self.trace_flow.check_index_compute(start_idx, end_dim, end_node, end_idx):
continue
# flow search
chunk_info = self.trace_flow.flow_search(start_idx, start_dim, end_idx, end_dim)
if chunk_info is None:
continue
# check index copmute
if not self.trace_flow.check_index_duplicate(chunk_info):
continue
chunk_infos.append(chunk_info)
return chunk_infos
def _search_possible_chunk_regions(self, max_chunk_region: Tuple, peak_node: Node) -> List:
"""
Search every possible region within the max chunk region.
Args:
max_chunk_region (Tuple)
peak_node (Node): peak memory node
Returns:
possible_chunk_region (List)
"""
possible_chunk_region = []
output_trace = copy.deepcopy(self.trace_indice.indice_trace_list)
input_trace = [] # trace of a node's input nodes
for _, n in enumerate(self.trace_indice.node_list):
cur_trace = {}
for arg in n.args:
if type(arg) == type(n) and not is_non_compute_node_except_placeholder(arg):
cur_trace[arg] = self.trace_indice._find_trace_from_node(arg)
input_trace.append(cur_trace)
for start_idx in range(max_chunk_region[0], peak_node + 1):
for end_idx in range(peak_node, max_chunk_region[1] + 1):
# skip non compute nodes
if is_non_compute_node(self.trace_indice.node_list[start_idx]) or is_non_compute_node(
self.trace_indice.node_list[end_idx]):
continue
# select free dim
chunk_info = self._find_chunk_info(input_trace, output_trace, start_idx, end_idx)
if len(chunk_info) > 0:
possible_chunk_region.extend(chunk_info)
return possible_chunk_region
def _step_search(
self,
mem_peak: List[float],
active_node: List[List[Node]],
chunk_infos: List[Dict],
) -> Dict:
"""
Find one chunk region
The chunk search is as follows:
1. find the peak memory node
2. find the max chunk region according to the peak memory node
3. find all possible chunk regions in the max chunk region
4. find the best chunk region for current status
Args:
mem_peak (List): peak memory for every node
active_node (List[List[Node]]): active node for every node
chunk_infos (List[Dict]): all chunk info
Returns:
best_chunk_region (Dict)
"""
peak_node = self._find_peak_node(mem_peak)
max_chunk_region = self._search_max_chunk_region(active_node, peak_node, chunk_infos)
if max_chunk_region == None:
return None
possible_chunk_regions = self._search_possible_chunk_regions(max_chunk_region, peak_node)
best_chunk_region = self.select_chunk._select_best_chunk_region(possible_chunk_regions, chunk_infos, peak_node,
max_chunk_region, mem_peak)
best_chunk_region = self.reorder_graph.reorder_all(best_chunk_region)
return best_chunk_region
def _stop_search(self, init_mem_peak, mem_peak):
sorted_init_mem_peak = sorted(init_mem_peak)
if max(mem_peak) < sorted_init_mem_peak[int(len(sorted_init_mem_peak) * 0.5)]:
return True
return False
def search_region(self) -> Dict:
"""
Search all chunk regions:
1. Estimate current memory
2. Find best chunk for current memory
3. goto 1
Returns:
chunk_infos (Dict)
"""
if self.print_progress:
get_logger().info("AutoChunk start searching chunk regions")
chunk_infos = []
(
init_mem_peak,
_,
active_node,
) = self.estimate_memory.estimate_chunk_inference_mem(self.trace_indice.node_list)
mem_peak = init_mem_peak
while True:
chunk_info = self._step_search(mem_peak, active_node, chunk_infos)
if chunk_info is None:
break
chunk_infos.append(chunk_info)
(
mem_peak,
_,
active_node,
) = self.estimate_memory.estimate_chunk_inference_mem(self.trace_indice.node_list, chunk_infos)
if self.print_progress:
get_logger().info("AutoChunk find chunk region %d = (%d, %d)" %
(len(chunk_infos), chunk_info["region"][0], chunk_info["region"][1]))
if self._stop_search(init_mem_peak, mem_peak):
break
if self.print_mem:
self.print_mem = False
self.estimate_memory.estimate_chunk_inference_mem(self.trace_indice.node_list, chunk_infos, print_mem=True)
return chunk_infos