mirror of
https://github.com/hpcaitech/ColossalAI.git
synced 2025-08-29 21:23:21 +00:00
* init
* rename and remove useless func
* basic chunk
* add evoformer
* align evoformer
* add meta
* basic chunk
* basic memory
* finish basic inference memory estimation
* finish memory estimation
* fix bug
* finish memory estimation
* add part of index tracer
* finish basic index tracer
* add doc string
* add doc str
* polish code
* polish code
* update active log
* polish code
* add possible region search
* finish region search loop
* finish chunk define
* support new op
* rename index tracer
* finishi codegen on msa
* redesign index tracer, add source and change compute
* pass outproduct mean
* code format
* code format
* work with outerproductmean and msa
* code style
* code style
* code style
* code style
* change threshold
* support check_index_duplicate
* support index dupilictae and update loop
* support output
* update memory estimate
* optimise search
* fix layernorm
* move flow tracer
* refactor flow tracer
* format code
* refactor flow search
* code style
* adapt codegen to prepose node
* code style
* remove abandoned function
* remove flow tracer
* code style
* code style
* reorder nodes
* finish node reorder
* update run
* code style
* add chunk select class
* add chunk select
* code style
* add chunksize in emit, fix bug in reassgin shape
* code style
* turn off print mem
* add evoformer openfold init
* init openfold
* add benchmark
* add print
* code style
* code style
* init openfold
* update openfold
* align openfold
* use max_mem to control stratge
* update source add
* add reorder in mem estimator
* improve reorder efficeincy
* support ones_like, add prompt if fit mode search fail
* fix a bug in ones like, dont gen chunk if dim size is 1
* fix bug again
* update min memory stratege, reduce mem usage by 30%
* last version of benchmark
* refactor structure
* restruct dir
* update test
* rename
* take apart chunk code gen
* close mem and code print
* code format
* rename ambiguous variable
* seperate flow tracer
* seperate input node dim search
* seperate prepose_nodes
* seperate non chunk input
* seperate reorder
* rename
* ad reorder graph
* seperate trace flow
* code style
* code style
* fix typo
* set benchmark
* rename test
* update codegen test
* Fix state_dict key missing issue of the ZeroDDP (#2363)
* Fix state_dict output for ZeroDDP duplicated parameters
* Rewrite state_dict based on get_static_torch_model
* Modify get_static_torch_model to be compatible with the lower version (ZeroDDP)
* update codegen test
* update codegen test
* add chunk search test
* code style
* add available
* [hotfix] fix gpt gemini example (#2404)
* [hotfix] fix gpt gemini example
* [example] add new assertions
* remove autochunk_available
* [workflow] added nightly release to pypi (#2403)
* add comments
* code style
* add doc for search chunk
* [doc] updated readme regarding pypi installation (#2406)
* add doc for search
* [doc] updated kernel-related optimisers' docstring (#2385)
* [doc] updated kernel-related optimisers' docstring
* polish doc
* rename trace_index to trace_indice
* rename function from index to indice
* rename
* rename in doc
* [polish] polish code for get_static_torch_model (#2405)
* [gemini] polish code
* [testing] remove code
* [gemini] make more robust
* rename
* rename
* remove useless function
* [worfklow] added coverage test (#2399)
* [worfklow] added coverage test
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* add doc for trace indice
* [docker] updated Dockerfile and release workflow (#2410)
* add doc
* update doc
* add available
* change imports
* add test in import
* [workflow] refactored the example check workflow (#2411)
* [workflow] refactored the example check workflow
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* Update parallel_context.py (#2408)
* [hotfix] add DISTPAN argument for benchmark (#2412)
* change the benchmark config file
* change config
* revert config file
* rename distpan to distplan
* [workflow] added precommit check for code consistency (#2401)
* [workflow] added precommit check for code consistency
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* adapt new fx
* [workflow] added translation for non-english comments (#2414)
* [setup] refactored setup.py for dependency graph (#2413)
* change import
* update doc
* [workflow] auto comment if precommit check fails (#2417)
* [hotfix] add norm clearing for the overflow step (#2416)
* [examples] adding tflops to PaLM (#2365)
* [workflow]auto comment with test coverage report (#2419)
* [workflow]auto comment with test coverage report
* polish code
* polish yaml
* [doc] added documentation for CI/CD (#2420)
* [doc] added documentation for CI/CD
* polish markdown
* polish markdown
* polish markdown
* [example] removed duplicated stable diffusion example (#2424)
* [zero] add inference mode and its unit test (#2418)
* [workflow] report test coverage even if below threshold (#2431)
* [example] improved the clarity yof the example readme (#2427)
* [example] improved the clarity yof the example readme
* polish workflow
* polish workflow
* polish workflow
* polish workflow
* polish workflow
* polish workflow
* [ddp] add is_ddp_ignored (#2434)
[ddp] rename to is_ddp_ignored
* [workflow] make test coverage report collapsable (#2436)
* [autoparallel] add shard option (#2423)
* [fx] allow native ckpt trace and codegen. (#2438)
* [cli] provided more details if colossalai run fail (#2442)
* [autoparallel] integrate device mesh initialization into autoparallelize (#2393)
* [autoparallel] integrate device mesh initialization into autoparallelize
* add megatron solution
* update gpt autoparallel examples with latest api
* adapt beta value to fit the current computation cost
* [zero] fix state_dict and load_state_dict for ddp ignored parameters (#2443)
* [ddp] add is_ddp_ignored
[ddp] rename to is_ddp_ignored
* [zero] fix state_dict and load_state_dict
* fix bugs
* [zero] update unit test for ZeroDDP
* [example] updated the hybrid parallel tutorial (#2444)
* [example] updated the hybrid parallel tutorial
* polish code
* [zero] add warning for ignored parameters (#2446)
* [example] updated large-batch optimizer tutorial (#2448)
* [example] updated large-batch optimizer tutorial
* polish code
* polish code
* [example] fixed seed error in train_dreambooth_colossalai.py (#2445)
* [workflow] fixed the on-merge condition check (#2452)
* [workflow] automated the compatiblity test (#2453)
* [workflow] automated the compatiblity test
* polish code
* [autoparallel] update binary elementwise handler (#2451)
* [autoparallel] update binary elementwise handler
* polish
* [workflow] automated bdist wheel build (#2459)
* [workflow] automated bdist wheel build
* polish workflow
* polish readme
* polish readme
* Fix False warning in initialize.py (#2456)
* Update initialize.py
* pre-commit run check
* [examples] update autoparallel tutorial demo (#2449)
* [examples] update autoparallel tutorial demo
* add test_ci.sh
* polish
* add conda yaml
* [cli] fixed hostname mismatch error (#2465)
* [example] integrate autoparallel demo with CI (#2466)
* [example] integrate autoparallel demo with CI
* polish code
* polish code
* polish code
* polish code
* [zero] low level optim supports ProcessGroup (#2464)
* [example] update vit ci script (#2469)
* [example] update vit ci script
* [example] update requirements
* [example] update requirements
* [example] integrate seq-parallel tutorial with CI (#2463)
* [zero] polish low level optimizer (#2473)
* polish pp middleware (#2476)
Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>
* [example] update gpt gemini example ci test (#2477)
* [zero] add unit test for low-level zero init (#2474)
* [workflow] fixed the skip condition of example weekly check workflow (#2481)
* [example] stable diffusion add roadmap
* add dummy test_ci.sh
* [example] stable diffusion add roadmap (#2482)
* [CI] add test_ci.sh for palm, opt and gpt (#2475)
* polish code
* [example] titans for gpt
* polish readme
* remove license
* polish code
* update readme
* [example] titans for gpt (#2484)
* [autoparallel] support origin activation ckpt on autoprallel system (#2468)
* [autochunk] support evoformer tracer (#2485)
support full evoformer tracer, which is a main module of alphafold. previously we just support a simplifed version of it.
1. support some evoformer's op in fx
2. support evoformer test
3. add repos for test code
* [example] fix requirements (#2488)
* [zero] add unit testings for hybrid parallelism (#2486)
* [hotfix] gpt example titans bug #2493
* polish code and fix dataloader bugs
* [hotfix] gpt example titans bug #2493 (#2494)
* [fx] allow control of ckpt_codegen init (#2498)
* [fx] allow control of ckpt_codegen init
Currently in ColoGraphModule, ActivationCheckpointCodeGen will be set automatically in __init__. But other codegen can't be set if so.
So I add an arg to control whether to set ActivationCheckpointCodeGen in __init__.
* code style
* [example] dreambooth example
* add test_ci.sh to dreambooth
* [autochunk] support autochunk on evoformer (#2497)
* Revert "Update parallel_context.py (#2408)"
This reverts commit 7d5640b9db
.
* add avg partition (#2483)
Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>
* [auto-chunk] support extramsa (#3) (#2504)
* [utils] lazy init. (#2148)
* [utils] lazy init.
* [utils] remove description.
* [utils] complete.
* [utils] finalize.
* [utils] fix names.
* [autochunk] support parsing blocks (#2506)
* [zero] add strict ddp mode (#2508)
* [zero] add strict ddp mode
* [polish] add comments for strict ddp mode
* [zero] fix test error
* [doc] update opt and tutorial links (#2509)
* [workflow] fixed changed file detection (#2515)
Co-authored-by: oahzxl <xuanlei.zhao@gmail.com>
Co-authored-by: eric8607242 <e0928021388@gmail.com>
Co-authored-by: HELSON <c2h214748@gmail.com>
Co-authored-by: Frank Lee <somerlee.9@gmail.com>
Co-authored-by: Haofan Wang <haofanwang.ai@gmail.com>
Co-authored-by: Jiarui Fang <fangjiarui123@gmail.com>
Co-authored-by: ZijianYY <119492445+ZijianYY@users.noreply.github.com>
Co-authored-by: YuliangLiu0306 <72588413+YuliangLiu0306@users.noreply.github.com>
Co-authored-by: Super Daniel <78588128+super-dainiu@users.noreply.github.com>
Co-authored-by: ver217 <lhx0217@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang97@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>
Co-authored-by: oahzxl <43881818+oahzxl@users.noreply.github.com>
Co-authored-by: binmakeswell <binmakeswell@gmail.com>
Co-authored-by: Fazzie-Maqianli <55798671+Fazziekey@users.noreply.github.com>
Co-authored-by: アマデウス <kurisusnowdeng@users.noreply.github.com>
175 lines
7.2 KiB
Python
175 lines
7.2 KiB
Python
import os
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import warnings
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from pathlib import Path
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from typing import Any, Dict, List, Optional, Set, Type, Union
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import torch
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import torch.nn as nn
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from torch.nn.modules.module import _addindent
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try:
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from torch.fx.graph import Graph, PythonCode, _custom_builtins, _is_from_torch, _PyTreeCodeGen
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from torch.fx.graph_module import GraphModule, _EvalCacheLoader, _exec_with_source, _forward_from_src, _WrappedCall
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from colossalai.fx.codegen.activation_checkpoint_codegen import ActivationCheckpointCodeGen
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COLOGM = True
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except:
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from torch.fx.graph import Graph
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from torch.fx.graph_module import GraphModule
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COLOGM = False
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if COLOGM:
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class ColoGraphModule(GraphModule):
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def __init__(self,
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root: Union[torch.nn.Module, Dict[str, Any]],
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graph: Graph,
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class_name: str = 'GraphModule',
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ckpt_codegen: bool = True):
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if ckpt_codegen:
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graph.set_codegen(ActivationCheckpointCodeGen())
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super().__init__(root, graph, class_name)
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def bind(self, ckpt_def, globals):
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"""Bind function needed for correctly execute gm forward
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We need to bind checkpoint functions and saved_tensor_hooks functions
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to gm so that we could correctly execute gm forward
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Args:
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ckpt_def (_type_): definition before the forward function
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globals (_type_): global variables
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"""
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ckpt_code = "\n".join(ckpt_def)
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globals_copy = globals.copy()
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_exec_with_source(ckpt_code, globals_copy)
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func_list = [func for func in globals_copy.keys() if "checkpoint" in func or "pack" in func]
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for func in func_list:
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tmp_func = globals_copy[func]
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setattr(self, func, tmp_func.__get__(self, self.__class__))
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del globals_copy[func]
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def recompile(self) -> PythonCode:
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"""
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Recompile this GraphModule from its ``graph`` attribute. This should be
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called after editing the contained ``graph``, otherwise the generated
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code of this ``GraphModule`` will be out of date.
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"""
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if isinstance(self._graph._codegen, _PyTreeCodeGen):
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self._in_spec = self._graph._codegen.pytree_info.in_spec
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self._out_spec = self._graph._codegen.pytree_info.out_spec
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python_code = self._graph.python_code(root_module='self')
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self._code = python_code.src
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# To split ckpt functions code and forward code
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_code_list = self._code.split("\n")
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_fwd_def = [item for item in _code_list if "def forward" in item][0]
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_fwd_idx = _code_list.index(_fwd_def)
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ckpt_def = _code_list[:_fwd_idx]
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self._code = "\n".join(_code_list[_fwd_idx:])
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self.bind(ckpt_def, python_code.globals)
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cls = type(self)
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cls.forward = _forward_from_src(self._code, python_code.globals)
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# Determine whether this class explicitly defines a __call__ implementation
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# to wrap. If it does, save it in order to have wrapped_call invoke it.
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# If it does not, wrapped_call can use a dynamic call to super() instead.
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# In most cases, super().__call__ should be torch.nn.Module.__call__.
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# We do not want to hold a reference to Module.__call__ here; doing so will
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# bypass patching of torch.nn.Module.__call__ done while symbolic tracing.
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cls_call = cls.__call__ if "__call__" in vars(cls) else None
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if '_wrapped_call' not in vars(cls):
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cls._wrapped_call = _WrappedCall(cls, cls_call) # type: ignore[attr-defined]
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def call_wrapped(self, *args, **kwargs):
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return self._wrapped_call(self, *args, **kwargs)
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cls.__call__ = call_wrapped
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# reset self._code to original src, otherwise to_folder will be wrong
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self._code = python_code.src
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return python_code
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def to_folder(self, folder: Union[str, os.PathLike], module_name: str = "FxModule"):
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"""Dumps out module to ``folder`` with ``module_name`` so that it can be
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imported with ``from <folder> import <module_name>``
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Args:
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folder (Union[str, os.PathLike]): The folder to write the code out to
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module_name (str): Top-level name to use for the ``Module`` while
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writing out the code
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"""
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folder = Path(folder)
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Path(folder).mkdir(exist_ok=True)
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torch.save(self.state_dict(), folder / 'state_dict.pt')
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tab = " " * 4
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# we add import colossalai here
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model_str = f"""
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import torch
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from torch.nn import *
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import colossalai
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class {module_name}(torch.nn.Module):
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def __init__(self):
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super().__init__()
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"""
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def _gen_model_repr(module_name: str, module: torch.nn.Module) -> Optional[str]:
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safe_reprs = [
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nn.Linear, nn.Conv1d, nn.Conv2d, nn.Conv3d, nn.BatchNorm1d, nn.BatchNorm2d, nn.BatchNorm3d
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]
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if type(module) in safe_reprs:
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return f"{module.__repr__()}"
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else:
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return None
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blobified_modules = []
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for module_name, module in self.named_children():
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module_str = _gen_model_repr(module_name, module)
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if module_str is None:
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module_file = folder / f'{module_name}.pt'
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torch.save(module, module_file)
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blobified_modules.append(module_name)
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module_repr = module.__repr__().replace('\r', ' ').replace('\n', ' ')
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module_str = f"torch.load(r'{module_file}') # {module_repr}"
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model_str += f"{tab*2}self.{module_name} = {module_str}\n"
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for buffer_name, buffer in self._buffers.items():
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if buffer is None:
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continue
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model_str += f"{tab*2}self.register_buffer('{buffer_name}', torch.empty({list(buffer.shape)}, dtype={buffer.dtype}))\n"
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for param_name, param in self._parameters.items():
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if param is None:
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continue
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model_str += f"{tab*2}self.{param_name} = torch.nn.Parameter(torch.empty({list(param.shape)}, dtype={param.dtype}))\n"
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model_str += f"{tab*2}self.load_state_dict(torch.load(r'{folder}/state_dict.pt'))\n"
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model_str += f"{_addindent(self.code, 4)}\n"
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module_file = folder / 'module.py'
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module_file.write_text(model_str)
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init_file = folder / '__init__.py'
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init_file.write_text('from .module import *')
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if len(blobified_modules) > 0:
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warnings.warn("Was not able to save the following children modules as reprs -"
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f"saved as pickled files instead: {blobified_modules}")
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else:
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class ColoGraphModule(GraphModule):
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def __init__(self, root: Union[torch.nn.Module, Dict[str, Any]], graph: Graph, class_name: str = 'GraphModule'):
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super().__init__(root, graph, class_name)
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