ColossalAI/colossalai/fx/graph_module.py
Boyuan Yao 7a58dc5ad2
Update metainfo patch branch (#2517)
* init

* rename and remove useless func

* basic chunk

* add evoformer

* align evoformer

* add meta

* basic chunk

* basic memory

* finish basic inference memory estimation

* finish memory estimation

* fix bug

* finish memory estimation

* add part of index tracer

* finish basic index tracer

* add doc string

* add doc str

* polish code

* polish code

* update active log

* polish code

* add possible region search

* finish region search loop

* finish chunk define

* support new op

* rename index tracer

* finishi codegen on msa

* redesign index tracer, add source and change compute

* pass outproduct mean

* code format

* code format

* work with outerproductmean and msa

* code style

* code style

* code style

* code style

* change threshold

* support check_index_duplicate

* support index dupilictae and update loop

* support output

* update memory estimate

* optimise search

* fix layernorm

* move flow tracer

* refactor flow tracer

* format code

* refactor flow search

* code style

* adapt codegen to prepose node

* code style

* remove abandoned function

* remove flow tracer

* code style

* code style

* reorder nodes

* finish node reorder

* update run

* code style

* add chunk select class

* add chunk select

* code style

* add chunksize in emit, fix bug in reassgin shape

* code style

* turn off print mem

* add evoformer openfold init

* init openfold

* add benchmark

* add print

* code style

* code style

* init openfold

* update openfold

* align openfold

* use max_mem to control stratge

* update source add

* add reorder in mem estimator

* improve reorder efficeincy

* support ones_like, add prompt if fit mode search fail

* fix a bug in ones like, dont gen chunk if dim size is 1

* fix bug again

* update min memory stratege, reduce mem usage by 30%

* last version of benchmark

* refactor structure

* restruct dir

* update test

* rename

* take apart chunk code gen

* close mem and code print

* code format

* rename ambiguous variable

* seperate flow tracer

* seperate input node dim search

* seperate prepose_nodes

* seperate non chunk input

* seperate reorder

* rename

* ad reorder graph

* seperate trace flow

* code style

* code style

* fix typo

* set benchmark

* rename test

* update codegen test

* Fix state_dict key missing issue of the ZeroDDP (#2363)

* Fix state_dict output for ZeroDDP duplicated parameters

* Rewrite state_dict based on get_static_torch_model

* Modify get_static_torch_model to be compatible with the lower version (ZeroDDP)

* update codegen test

* update codegen test

* add chunk search test

* code style

* add available

* [hotfix] fix gpt gemini example (#2404)

* [hotfix] fix gpt gemini example

* [example] add new assertions

* remove autochunk_available

* [workflow] added nightly release to pypi (#2403)

* add comments

* code style

* add doc for search chunk

* [doc] updated readme regarding pypi installation (#2406)

* add doc for search

* [doc] updated kernel-related optimisers' docstring (#2385)

* [doc] updated kernel-related optimisers' docstring

* polish doc

* rename trace_index to trace_indice

* rename function from index to indice

* rename

* rename in doc

* [polish] polish code for get_static_torch_model (#2405)

* [gemini] polish code

* [testing] remove code

* [gemini] make more robust

* rename

* rename

* remove useless function

* [worfklow] added coverage test (#2399)

* [worfklow] added coverage test

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* add doc for trace indice

* [docker] updated Dockerfile and release workflow (#2410)

* add doc

* update doc

* add available

* change imports

* add test in import

* [workflow] refactored the example check workflow (#2411)

* [workflow] refactored the example check workflow

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* Update parallel_context.py (#2408)

* [hotfix] add DISTPAN argument for benchmark (#2412)

* change the benchmark config file

* change config

* revert config file

* rename distpan to distplan

* [workflow] added precommit check for code consistency (#2401)

* [workflow] added precommit check for code consistency

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* adapt new fx

* [workflow] added translation for non-english comments (#2414)

* [setup] refactored setup.py for dependency graph (#2413)

* change import

* update doc

* [workflow] auto comment if precommit check fails (#2417)

* [hotfix] add norm clearing for the overflow step (#2416)

* [examples] adding tflops to PaLM (#2365)

* [workflow]auto comment with test coverage report (#2419)

* [workflow]auto comment with test coverage report

* polish code

* polish yaml

* [doc] added documentation for CI/CD (#2420)

* [doc] added documentation for CI/CD

* polish markdown

* polish markdown

* polish markdown

* [example] removed duplicated stable diffusion example (#2424)

* [zero] add inference mode and its unit test (#2418)

* [workflow] report test coverage even if below threshold (#2431)

* [example] improved the clarity yof the example readme (#2427)

* [example] improved the clarity yof the example readme

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* [ddp] add is_ddp_ignored (#2434)

[ddp] rename to is_ddp_ignored

* [workflow] make test coverage report collapsable (#2436)

* [autoparallel] add shard option (#2423)

* [fx] allow native ckpt trace and codegen. (#2438)

* [cli] provided more details if colossalai run fail (#2442)

* [autoparallel] integrate device mesh initialization into autoparallelize (#2393)

* [autoparallel] integrate device mesh initialization into autoparallelize

* add megatron solution

* update gpt autoparallel examples with latest api

* adapt beta value to fit the current computation cost

* [zero] fix state_dict and load_state_dict for ddp ignored parameters (#2443)

* [ddp] add is_ddp_ignored

[ddp] rename to is_ddp_ignored

* [zero] fix state_dict and load_state_dict

* fix bugs

* [zero] update unit test for ZeroDDP

* [example] updated the hybrid parallel tutorial (#2444)

* [example] updated the hybrid parallel tutorial

* polish code

* [zero] add warning for ignored parameters (#2446)

* [example] updated large-batch optimizer tutorial (#2448)

* [example] updated large-batch optimizer tutorial

* polish code

* polish code

* [example] fixed seed error in train_dreambooth_colossalai.py (#2445)

* [workflow] fixed the on-merge condition check (#2452)

* [workflow] automated the compatiblity test (#2453)

* [workflow] automated the compatiblity test

* polish code

* [autoparallel] update binary elementwise handler (#2451)

* [autoparallel] update binary elementwise handler

* polish

* [workflow] automated bdist wheel build (#2459)

* [workflow] automated bdist wheel build

* polish workflow

* polish readme

* polish readme

* Fix False warning in initialize.py (#2456)

* Update initialize.py

* pre-commit run check

* [examples] update autoparallel tutorial demo (#2449)

* [examples] update autoparallel tutorial demo

* add test_ci.sh

* polish

* add conda yaml

* [cli] fixed hostname mismatch error (#2465)

* [example] integrate autoparallel demo with CI (#2466)

* [example] integrate autoparallel demo with CI

* polish code

* polish code

* polish code

* polish code

* [zero] low level optim supports ProcessGroup (#2464)

* [example] update vit ci script (#2469)

* [example] update vit ci script

* [example] update requirements

* [example] update requirements

* [example] integrate seq-parallel tutorial with CI (#2463)

* [zero] polish low level optimizer (#2473)

* polish pp middleware (#2476)

Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>

* [example] update gpt gemini example ci test (#2477)

* [zero] add unit test for low-level zero init (#2474)

* [workflow] fixed the skip condition of  example weekly check workflow (#2481)

* [example] stable diffusion add roadmap

* add dummy test_ci.sh

* [example] stable diffusion add roadmap (#2482)

* [CI] add test_ci.sh for palm, opt and gpt (#2475)

* polish code

* [example] titans for gpt

* polish readme

* remove license

* polish code

* update readme

* [example] titans for gpt (#2484)

* [autoparallel] support origin activation ckpt on autoprallel system (#2468)

* [autochunk] support evoformer tracer (#2485)

support full evoformer tracer, which is a main module of alphafold. previously we just support a simplifed version of it.
1. support some evoformer's op in fx
2. support evoformer test
3. add repos for test code

* [example] fix requirements (#2488)

* [zero] add unit testings for hybrid parallelism  (#2486)

* [hotfix] gpt example titans bug #2493

* polish code and fix dataloader bugs

* [hotfix] gpt example titans bug #2493 (#2494)

* [fx] allow control of ckpt_codegen init (#2498)

* [fx] allow control of ckpt_codegen init

Currently in ColoGraphModule, ActivationCheckpointCodeGen will be set automatically in __init__. But other codegen can't be set if so. 
So I add an arg to control whether to set ActivationCheckpointCodeGen in __init__.

* code style

* [example] dreambooth example

* add test_ci.sh to dreambooth

* [autochunk] support autochunk on evoformer (#2497)

* Revert "Update parallel_context.py (#2408)"

This reverts commit 7d5640b9db.

* add avg partition (#2483)

Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>

* [auto-chunk] support extramsa (#3) (#2504)

* [utils] lazy init. (#2148)

* [utils] lazy init.

* [utils] remove description.

* [utils] complete.

* [utils] finalize.

* [utils] fix names.

* [autochunk] support parsing blocks (#2506)

* [zero] add strict ddp mode (#2508)

* [zero] add strict ddp mode

* [polish] add comments for strict ddp mode

* [zero] fix test error

* [doc] update opt and tutorial links (#2509)

* [workflow] fixed changed file detection (#2515)

Co-authored-by: oahzxl <xuanlei.zhao@gmail.com>
Co-authored-by: eric8607242 <e0928021388@gmail.com>
Co-authored-by: HELSON <c2h214748@gmail.com>
Co-authored-by: Frank Lee <somerlee.9@gmail.com>
Co-authored-by: Haofan Wang <haofanwang.ai@gmail.com>
Co-authored-by: Jiarui Fang <fangjiarui123@gmail.com>
Co-authored-by: ZijianYY <119492445+ZijianYY@users.noreply.github.com>
Co-authored-by: YuliangLiu0306 <72588413+YuliangLiu0306@users.noreply.github.com>
Co-authored-by: Super Daniel <78588128+super-dainiu@users.noreply.github.com>
Co-authored-by: ver217 <lhx0217@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang97@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>
Co-authored-by: oahzxl <43881818+oahzxl@users.noreply.github.com>
Co-authored-by: binmakeswell <binmakeswell@gmail.com>
Co-authored-by: Fazzie-Maqianli <55798671+Fazziekey@users.noreply.github.com>
Co-authored-by: アマデウス <kurisusnowdeng@users.noreply.github.com>
2023-01-27 09:52:21 +08:00

175 lines
7.2 KiB
Python

import os
import warnings
from pathlib import Path
from typing import Any, Dict, List, Optional, Set, Type, Union
import torch
import torch.nn as nn
from torch.nn.modules.module import _addindent
try:
from torch.fx.graph import Graph, PythonCode, _custom_builtins, _is_from_torch, _PyTreeCodeGen
from torch.fx.graph_module import GraphModule, _EvalCacheLoader, _exec_with_source, _forward_from_src, _WrappedCall
from colossalai.fx.codegen.activation_checkpoint_codegen import ActivationCheckpointCodeGen
COLOGM = True
except:
from torch.fx.graph import Graph
from torch.fx.graph_module import GraphModule
COLOGM = False
if COLOGM:
class ColoGraphModule(GraphModule):
def __init__(self,
root: Union[torch.nn.Module, Dict[str, Any]],
graph: Graph,
class_name: str = 'GraphModule',
ckpt_codegen: bool = True):
if ckpt_codegen:
graph.set_codegen(ActivationCheckpointCodeGen())
super().__init__(root, graph, class_name)
def bind(self, ckpt_def, globals):
"""Bind function needed for correctly execute gm forward
We need to bind checkpoint functions and saved_tensor_hooks functions
to gm so that we could correctly execute gm forward
Args:
ckpt_def (_type_): definition before the forward function
globals (_type_): global variables
"""
ckpt_code = "\n".join(ckpt_def)
globals_copy = globals.copy()
_exec_with_source(ckpt_code, globals_copy)
func_list = [func for func in globals_copy.keys() if "checkpoint" in func or "pack" in func]
for func in func_list:
tmp_func = globals_copy[func]
setattr(self, func, tmp_func.__get__(self, self.__class__))
del globals_copy[func]
def recompile(self) -> PythonCode:
"""
Recompile this GraphModule from its ``graph`` attribute. This should be
called after editing the contained ``graph``, otherwise the generated
code of this ``GraphModule`` will be out of date.
"""
if isinstance(self._graph._codegen, _PyTreeCodeGen):
self._in_spec = self._graph._codegen.pytree_info.in_spec
self._out_spec = self._graph._codegen.pytree_info.out_spec
python_code = self._graph.python_code(root_module='self')
self._code = python_code.src
# To split ckpt functions code and forward code
_code_list = self._code.split("\n")
_fwd_def = [item for item in _code_list if "def forward" in item][0]
_fwd_idx = _code_list.index(_fwd_def)
ckpt_def = _code_list[:_fwd_idx]
self._code = "\n".join(_code_list[_fwd_idx:])
self.bind(ckpt_def, python_code.globals)
cls = type(self)
cls.forward = _forward_from_src(self._code, python_code.globals)
# Determine whether this class explicitly defines a __call__ implementation
# to wrap. If it does, save it in order to have wrapped_call invoke it.
# If it does not, wrapped_call can use a dynamic call to super() instead.
# In most cases, super().__call__ should be torch.nn.Module.__call__.
# We do not want to hold a reference to Module.__call__ here; doing so will
# bypass patching of torch.nn.Module.__call__ done while symbolic tracing.
cls_call = cls.__call__ if "__call__" in vars(cls) else None
if '_wrapped_call' not in vars(cls):
cls._wrapped_call = _WrappedCall(cls, cls_call) # type: ignore[attr-defined]
def call_wrapped(self, *args, **kwargs):
return self._wrapped_call(self, *args, **kwargs)
cls.__call__ = call_wrapped
# reset self._code to original src, otherwise to_folder will be wrong
self._code = python_code.src
return python_code
def to_folder(self, folder: Union[str, os.PathLike], module_name: str = "FxModule"):
"""Dumps out module to ``folder`` with ``module_name`` so that it can be
imported with ``from <folder> import <module_name>``
Args:
folder (Union[str, os.PathLike]): The folder to write the code out to
module_name (str): Top-level name to use for the ``Module`` while
writing out the code
"""
folder = Path(folder)
Path(folder).mkdir(exist_ok=True)
torch.save(self.state_dict(), folder / 'state_dict.pt')
tab = " " * 4
# we add import colossalai here
model_str = f"""
import torch
from torch.nn import *
import colossalai
class {module_name}(torch.nn.Module):
def __init__(self):
super().__init__()
"""
def _gen_model_repr(module_name: str, module: torch.nn.Module) -> Optional[str]:
safe_reprs = [
nn.Linear, nn.Conv1d, nn.Conv2d, nn.Conv3d, nn.BatchNorm1d, nn.BatchNorm2d, nn.BatchNorm3d
]
if type(module) in safe_reprs:
return f"{module.__repr__()}"
else:
return None
blobified_modules = []
for module_name, module in self.named_children():
module_str = _gen_model_repr(module_name, module)
if module_str is None:
module_file = folder / f'{module_name}.pt'
torch.save(module, module_file)
blobified_modules.append(module_name)
module_repr = module.__repr__().replace('\r', ' ').replace('\n', ' ')
module_str = f"torch.load(r'{module_file}') # {module_repr}"
model_str += f"{tab*2}self.{module_name} = {module_str}\n"
for buffer_name, buffer in self._buffers.items():
if buffer is None:
continue
model_str += f"{tab*2}self.register_buffer('{buffer_name}', torch.empty({list(buffer.shape)}, dtype={buffer.dtype}))\n"
for param_name, param in self._parameters.items():
if param is None:
continue
model_str += f"{tab*2}self.{param_name} = torch.nn.Parameter(torch.empty({list(param.shape)}, dtype={param.dtype}))\n"
model_str += f"{tab*2}self.load_state_dict(torch.load(r'{folder}/state_dict.pt'))\n"
model_str += f"{_addindent(self.code, 4)}\n"
module_file = folder / 'module.py'
module_file.write_text(model_str)
init_file = folder / '__init__.py'
init_file.write_text('from .module import *')
if len(blobified_modules) > 0:
warnings.warn("Was not able to save the following children modules as reprs -"
f"saved as pickled files instead: {blobified_modules}")
else:
class ColoGraphModule(GraphModule):
def __init__(self, root: Union[torch.nn.Module, Dict[str, Any]], graph: Graph, class_name: str = 'GraphModule'):
super().__init__(root, graph, class_name)