mirror of
https://github.com/hpcaitech/ColossalAI.git
synced 2025-08-30 15:01:38 +00:00
* init
* rename and remove useless func
* basic chunk
* add evoformer
* align evoformer
* add meta
* basic chunk
* basic memory
* finish basic inference memory estimation
* finish memory estimation
* fix bug
* finish memory estimation
* add part of index tracer
* finish basic index tracer
* add doc string
* add doc str
* polish code
* polish code
* update active log
* polish code
* add possible region search
* finish region search loop
* finish chunk define
* support new op
* rename index tracer
* finishi codegen on msa
* redesign index tracer, add source and change compute
* pass outproduct mean
* code format
* code format
* work with outerproductmean and msa
* code style
* code style
* code style
* code style
* change threshold
* support check_index_duplicate
* support index dupilictae and update loop
* support output
* update memory estimate
* optimise search
* fix layernorm
* move flow tracer
* refactor flow tracer
* format code
* refactor flow search
* code style
* adapt codegen to prepose node
* code style
* remove abandoned function
* remove flow tracer
* code style
* code style
* reorder nodes
* finish node reorder
* update run
* code style
* add chunk select class
* add chunk select
* code style
* add chunksize in emit, fix bug in reassgin shape
* code style
* turn off print mem
* add evoformer openfold init
* init openfold
* add benchmark
* add print
* code style
* code style
* init openfold
* update openfold
* align openfold
* use max_mem to control stratge
* update source add
* add reorder in mem estimator
* improve reorder efficeincy
* support ones_like, add prompt if fit mode search fail
* fix a bug in ones like, dont gen chunk if dim size is 1
* fix bug again
* update min memory stratege, reduce mem usage by 30%
* last version of benchmark
* refactor structure
* restruct dir
* update test
* rename
* take apart chunk code gen
* close mem and code print
* code format
* rename ambiguous variable
* seperate flow tracer
* seperate input node dim search
* seperate prepose_nodes
* seperate non chunk input
* seperate reorder
* rename
* ad reorder graph
* seperate trace flow
* code style
* code style
* fix typo
* set benchmark
* rename test
* update codegen test
* Fix state_dict key missing issue of the ZeroDDP (#2363)
* Fix state_dict output for ZeroDDP duplicated parameters
* Rewrite state_dict based on get_static_torch_model
* Modify get_static_torch_model to be compatible with the lower version (ZeroDDP)
* update codegen test
* update codegen test
* add chunk search test
* code style
* add available
* [hotfix] fix gpt gemini example (#2404)
* [hotfix] fix gpt gemini example
* [example] add new assertions
* remove autochunk_available
* [workflow] added nightly release to pypi (#2403)
* add comments
* code style
* add doc for search chunk
* [doc] updated readme regarding pypi installation (#2406)
* add doc for search
* [doc] updated kernel-related optimisers' docstring (#2385)
* [doc] updated kernel-related optimisers' docstring
* polish doc
* rename trace_index to trace_indice
* rename function from index to indice
* rename
* rename in doc
* [polish] polish code for get_static_torch_model (#2405)
* [gemini] polish code
* [testing] remove code
* [gemini] make more robust
* rename
* rename
* remove useless function
* [worfklow] added coverage test (#2399)
* [worfklow] added coverage test
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* add doc for trace indice
* [docker] updated Dockerfile and release workflow (#2410)
* add doc
* update doc
* add available
* change imports
* add test in import
* [workflow] refactored the example check workflow (#2411)
* [workflow] refactored the example check workflow
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* Update parallel_context.py (#2408)
* [hotfix] add DISTPAN argument for benchmark (#2412)
* change the benchmark config file
* change config
* revert config file
* rename distpan to distplan
* [workflow] added precommit check for code consistency (#2401)
* [workflow] added precommit check for code consistency
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* adapt new fx
* [workflow] added translation for non-english comments (#2414)
* [setup] refactored setup.py for dependency graph (#2413)
* change import
* update doc
* [workflow] auto comment if precommit check fails (#2417)
* [hotfix] add norm clearing for the overflow step (#2416)
* [examples] adding tflops to PaLM (#2365)
* [workflow]auto comment with test coverage report (#2419)
* [workflow]auto comment with test coverage report
* polish code
* polish yaml
* [doc] added documentation for CI/CD (#2420)
* [doc] added documentation for CI/CD
* polish markdown
* polish markdown
* polish markdown
* [example] removed duplicated stable diffusion example (#2424)
* [zero] add inference mode and its unit test (#2418)
* [workflow] report test coverage even if below threshold (#2431)
* [example] improved the clarity yof the example readme (#2427)
* [example] improved the clarity yof the example readme
* polish workflow
* polish workflow
* polish workflow
* polish workflow
* polish workflow
* polish workflow
* [ddp] add is_ddp_ignored (#2434)
[ddp] rename to is_ddp_ignored
* [workflow] make test coverage report collapsable (#2436)
* [autoparallel] add shard option (#2423)
* [fx] allow native ckpt trace and codegen. (#2438)
* [cli] provided more details if colossalai run fail (#2442)
* [autoparallel] integrate device mesh initialization into autoparallelize (#2393)
* [autoparallel] integrate device mesh initialization into autoparallelize
* add megatron solution
* update gpt autoparallel examples with latest api
* adapt beta value to fit the current computation cost
* [zero] fix state_dict and load_state_dict for ddp ignored parameters (#2443)
* [ddp] add is_ddp_ignored
[ddp] rename to is_ddp_ignored
* [zero] fix state_dict and load_state_dict
* fix bugs
* [zero] update unit test for ZeroDDP
* [example] updated the hybrid parallel tutorial (#2444)
* [example] updated the hybrid parallel tutorial
* polish code
* [zero] add warning for ignored parameters (#2446)
* [example] updated large-batch optimizer tutorial (#2448)
* [example] updated large-batch optimizer tutorial
* polish code
* polish code
* [example] fixed seed error in train_dreambooth_colossalai.py (#2445)
* [workflow] fixed the on-merge condition check (#2452)
* [workflow] automated the compatiblity test (#2453)
* [workflow] automated the compatiblity test
* polish code
* [autoparallel] update binary elementwise handler (#2451)
* [autoparallel] update binary elementwise handler
* polish
* [workflow] automated bdist wheel build (#2459)
* [workflow] automated bdist wheel build
* polish workflow
* polish readme
* polish readme
* Fix False warning in initialize.py (#2456)
* Update initialize.py
* pre-commit run check
* [examples] update autoparallel tutorial demo (#2449)
* [examples] update autoparallel tutorial demo
* add test_ci.sh
* polish
* add conda yaml
* [cli] fixed hostname mismatch error (#2465)
* [example] integrate autoparallel demo with CI (#2466)
* [example] integrate autoparallel demo with CI
* polish code
* polish code
* polish code
* polish code
* [zero] low level optim supports ProcessGroup (#2464)
* [example] update vit ci script (#2469)
* [example] update vit ci script
* [example] update requirements
* [example] update requirements
* [example] integrate seq-parallel tutorial with CI (#2463)
* [zero] polish low level optimizer (#2473)
* polish pp middleware (#2476)
Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>
* [example] update gpt gemini example ci test (#2477)
* [zero] add unit test for low-level zero init (#2474)
* [workflow] fixed the skip condition of example weekly check workflow (#2481)
* [example] stable diffusion add roadmap
* add dummy test_ci.sh
* [example] stable diffusion add roadmap (#2482)
* [CI] add test_ci.sh for palm, opt and gpt (#2475)
* polish code
* [example] titans for gpt
* polish readme
* remove license
* polish code
* update readme
* [example] titans for gpt (#2484)
* [autoparallel] support origin activation ckpt on autoprallel system (#2468)
* [autochunk] support evoformer tracer (#2485)
support full evoformer tracer, which is a main module of alphafold. previously we just support a simplifed version of it.
1. support some evoformer's op in fx
2. support evoformer test
3. add repos for test code
* [example] fix requirements (#2488)
* [zero] add unit testings for hybrid parallelism (#2486)
* [hotfix] gpt example titans bug #2493
* polish code and fix dataloader bugs
* [hotfix] gpt example titans bug #2493 (#2494)
* [fx] allow control of ckpt_codegen init (#2498)
* [fx] allow control of ckpt_codegen init
Currently in ColoGraphModule, ActivationCheckpointCodeGen will be set automatically in __init__. But other codegen can't be set if so.
So I add an arg to control whether to set ActivationCheckpointCodeGen in __init__.
* code style
* [example] dreambooth example
* add test_ci.sh to dreambooth
* [autochunk] support autochunk on evoformer (#2497)
* Revert "Update parallel_context.py (#2408)"
This reverts commit 7d5640b9db
.
* add avg partition (#2483)
Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>
* [auto-chunk] support extramsa (#3) (#2504)
* [utils] lazy init. (#2148)
* [utils] lazy init.
* [utils] remove description.
* [utils] complete.
* [utils] finalize.
* [utils] fix names.
* [autochunk] support parsing blocks (#2506)
* [zero] add strict ddp mode (#2508)
* [zero] add strict ddp mode
* [polish] add comments for strict ddp mode
* [zero] fix test error
* [doc] update opt and tutorial links (#2509)
* [workflow] fixed changed file detection (#2515)
Co-authored-by: oahzxl <xuanlei.zhao@gmail.com>
Co-authored-by: eric8607242 <e0928021388@gmail.com>
Co-authored-by: HELSON <c2h214748@gmail.com>
Co-authored-by: Frank Lee <somerlee.9@gmail.com>
Co-authored-by: Haofan Wang <haofanwang.ai@gmail.com>
Co-authored-by: Jiarui Fang <fangjiarui123@gmail.com>
Co-authored-by: ZijianYY <119492445+ZijianYY@users.noreply.github.com>
Co-authored-by: YuliangLiu0306 <72588413+YuliangLiu0306@users.noreply.github.com>
Co-authored-by: Super Daniel <78588128+super-dainiu@users.noreply.github.com>
Co-authored-by: ver217 <lhx0217@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang97@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>
Co-authored-by: oahzxl <43881818+oahzxl@users.noreply.github.com>
Co-authored-by: binmakeswell <binmakeswell@gmail.com>
Co-authored-by: Fazzie-Maqianli <55798671+Fazziekey@users.noreply.github.com>
Co-authored-by: アマデウス <kurisusnowdeng@users.noreply.github.com>
354 lines
13 KiB
Python
354 lines
13 KiB
Python
from dataclasses import asdict
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from typing import Any, Dict, List, NamedTuple, Tuple
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import torch
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import torch.fx
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from torch.fx.node import Argument, Node, Target
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from torch.utils._pytree import tree_map
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from colossalai.fx._compatibility import compatibility, is_compatible_with_meta
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from colossalai.fx.profiler import (
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GraphInfo,
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activation_size,
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calculate_fwd_in,
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calculate_fwd_out,
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calculate_fwd_tmp,
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profile_function,
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profile_method,
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profile_module,
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)
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@compatibility(is_backward_compatible=True)
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class TensorMetadata(NamedTuple):
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# TensorMetadata is a structure containing pertinent information
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# about a tensor within a PyTorch program.
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shape: torch.Size
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dtype: torch.dtype
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requires_grad: bool
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stride: Tuple[int]
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numel: int
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is_tensor: bool
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# TODO: we can add a list of sharding spec here, and record the sharding
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# behaviour by appending sharding spec into list.
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def _extract_tensor_metadata(result: torch.Tensor) -> TensorMetadata:
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"""
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Extract a TensorMetadata NamedTuple describing `result`.
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"""
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shape = result.shape
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dtype = result.dtype
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requires_grad = result.requires_grad
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stride = result.stride()
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numel = result.numel()
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is_tensor = True
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return TensorMetadata(shape, dtype, requires_grad, stride, numel, is_tensor)
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@compatibility(is_backward_compatible=True)
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class MetaInfoProp(torch.fx.Interpreter):
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"""
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Execute an FX graph Node-by-Node with meta tensor and
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record the memory usage, FLOPs, and type of the result
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into the corresponding node.
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Usage:
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BATCH_SIZE = 2
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DIM_IN = 4
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DIM_HIDDEN = 16
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DIM_OUT = 16
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model = torch.nn.Sequential(
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torch.nn.Linear(DIM_IN, DIM_HIDDEN),
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torch.nn.Linear(DIM_HIDDEN, DIM_OUT),
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)
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input_sample = torch.rand(BATCH_SIZE, DIM_IN)
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gm = symbolic_trace(model)
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interp = MetaInfoProp(gm)
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interp.run(input_sample)
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print(interp.summary(format='kb')) # don't panic if some statistics are 0.00 MB
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# output of above code is
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Op type Op Forward FLOPs Backward FLOPs FWD_OUT FWD_TMP BWD_OUT BWD_TMP
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----------- ------- --------------- ---------------- --------- --------- --------- ---------
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placeholder input_1 0 FLOPs 0 FLOPs 0.00 KB 0.00 KB 0.00 KB 0.00 KB
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call_module _0 128 FLOPs 288 FLOPs 0.12 KB 0.00 KB 0.34 KB 0.00 KB
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call_module _1 512 FLOPs 1,056 FLOPs 0.12 KB 0.00 KB 1.19 KB 0.00 KB
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output output 0 FLOPs 0 FLOPs 0.00 KB 0.00 KB 0.00 KB 0.00 KB
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Args:
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module (GraphModule): The module to be executed
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"""
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_is_proped: bool = False
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@compatibility(is_backward_compatible=True)
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def run_node(self, n: Node) -> Any:
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"""
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Run a specific node ``n`` and return the result.
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Calls into placeholder, get_attr, call_function,
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call_method, call_module, or output depending
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on ``node.op``
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Args:
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n (Node): The Node to execute
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Returns:
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Any: The result of executing ``n``
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"""
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self._is_proped = True
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result, meta_info = super().run_node(n)
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def extract_tensor_meta(obj):
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if isinstance(obj, torch.Tensor):
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return _extract_tensor_metadata(obj)
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else:
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return TensorMetadata(None, None, False, None, 0, False)
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tensor_meta = tree_map(extract_tensor_meta, result)
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n.meta['tensor_meta'] = tensor_meta
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n.meta = {**n.meta, **asdict(meta_info)} # extend MetaInfo to `n.meta`
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# TODO: the attribute node_size should be removed in the future
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setattr(n, 'node_size', activation_size(n.meta.get('fwd_out', 0)) + activation_size(n.meta.get('fwd_tmp', 0)))
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setattr(n, 'fwd_flop', n.meta.get('fwd_flop', 0))
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n.meta['type'] = type(result)
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# retain the autograd graph
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for param in self.module.parameters():
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param.grad = None
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return result
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# Main Node running APIs
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@compatibility(is_backward_compatible=True)
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def placeholder(self, target: 'Target', args: Tuple[Argument, ...], kwargs: Dict[str, Any]) -> Any:
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"""
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Execute a ``placeholder`` node. Note that this is stateful:
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``Interpreter`` maintains an internal iterator over
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arguments passed to ``run`` and this method returns
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next() on that iterator.
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Args:
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target (Target): The call target for this node. See
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`Node <https://pytorch.org/docs/master/fx.html#torch.fx.Node>`__ for
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details on semantics
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args (Tuple): Tuple of positional args for this invocation
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kwargs (Dict): Dict of keyword arguments for this invocation
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Returns:
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result (Any): The argument value that was retrieved
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meta_info (MetaInfo): The memory cost and FLOPs estimated with `MetaTensor`.
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"""
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return super().placeholder(target, args, kwargs), GraphInfo()
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@compatibility(is_backward_compatible=True)
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def get_attr(self, target: 'Target', args: Tuple[Argument, ...], kwargs: Dict[str, Any]) -> Any:
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"""
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Execute a ``get_attr`` node. Will retrieve an attribute
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value from the ``Module`` hierarchy of ``self.module``.
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Args:
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target (Target): The call target for this node. See
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`Node <https://pytorch.org/docs/master/fx.html#torch.fx.Node>`__ for
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details on semantics
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args (Tuple): Tuple of positional args for this invocation
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kwargs (Dict): Dict of keyword arguments for this invocation
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Return:
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result (Any): The argument value that was retrieved
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meta_info (MetaInfo): The memory cost and FLOPs estimated with `MetaTensor`.
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"""
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return super().get_attr(target, args, kwargs), GraphInfo()
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@compatibility(is_backward_compatible=True)
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def call_function(self, target: 'Target', args: Tuple[Argument, ...], kwargs: Dict[str, Any]) -> Any:
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"""
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Execute a ``call_function`` node with meta tensor and return the result and its meta profile.
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Args:
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target (Target): The call target for this node. See
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`Node <https://pytorch.org/docs/master/fx.html#torch.fx.Node>`__ for
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details on semantics
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args (Tuple): Tuple of positional args for this invocation
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kwargs (Dict): Dict of keyword arguments for this invocation
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Return
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result (Any): The argument value that was retrieved
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meta_info (MetaInfo): The memory cost and FLOPs estimated with `MetaTensor`.
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"""
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assert not isinstance(target, str)
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return profile_function(target)(*args, **kwargs)
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@compatibility(is_backward_compatible=True)
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def call_method(self, target: 'Target', args: Tuple[Argument, ...], kwargs: Dict[str, Any]) -> Any:
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"""
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Execute a ``call_method`` node with meta tensor and return the result and its meta profile.
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Args:
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target (Target): The call target for this node. See
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`Node <https://pytorch.org/docs/master/fx.html#torch.fx.Node>`__ for
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details on semantics
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args (Tuple): Tuple of positional args for this invocation
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kwargs (Dict): Dict of keyword arguments for this invocation
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Return
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result (Any): The argument value that was retrieved
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meta_info (MetaInfo): The memory cost and FLOPs estimated with `MetaTensor`.
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"""
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return profile_method(target)(*args, **kwargs)
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@compatibility(is_backward_compatible=True)
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def call_module(self, target: 'Target', args: Tuple[Argument, ...], kwargs: Dict[str, Any]) -> Any:
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"""
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Execute a ``call_module`` node with meta tensor and return the result and its meta profile.
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Args:
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target (Target): The call target for this node. See
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`Node <https://pytorch.org/docs/master/fx.html#torch.fx.Node>`__ for
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details on semantics
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args (Tuple): Tuple of positional args for this invocation
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kwargs (Dict): Dict of keyword arguments for this invocation
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Return
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result (Any): The argument value that was retrieved
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meta_info (MetaInfo): The memory cost and FLOPs estimated with `MetaTensor`.
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"""
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# Retrieve executed args and kwargs values from the environment
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# Execute the method and return the result
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assert isinstance(target, str)
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submod = self.fetch_attr(target)
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return profile_module(submod)(*args, **kwargs)
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@compatibility(is_backward_compatible=True)
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def output(self, target: 'Target', args: Tuple[Argument, ...], kwargs: Dict[str, Any]) -> Any:
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"""
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Execute an ``output`` node. This really just retrieves
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the value referenced by the ``output`` node and returns it.
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Args:
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target (Target): The call target for this node. See
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`Node <https://pytorch.org/docs/master/fx.html#torch.fx.Node>`__ for
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details on semantics
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args (Tuple): Tuple of positional args for this invocation
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kwargs (Dict): Dict of keyword arguments for this invocation
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Return:
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result (Any): The argument value that was retrieved
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meta_info (MetaInfo): The memory cost and FLOPs estimated with `MetaTensor`.
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"""
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if hasattr(args[0], '_tensor'):
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return args[0], GraphInfo(fwd_in=[args[0]._tensor])
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return args[0], GraphInfo(save_fwd_in=True)
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def propagate(self, *args):
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"""
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Run `module` via interpretation and return the result and
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record the shape and type of each node.
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Args:
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*args (Tensor): the sample input.
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Returns:
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Any: The value returned from executing the Module
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"""
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return super().run(*args)
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def summary(self, unit: str = 'MB') -> str:
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"""
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Summarizes the memory and FLOPs statistics of the `GraphModule` in
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tabular format. Note that this API requires the ``tabulate`` module
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to be installed.
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"""
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# https://github.com/pytorch/pytorch/blob/master/torch/fx/graph.py
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try:
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from tabulate import tabulate
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except ImportError:
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print("`summary` relies on the library `tabulate`, "
|
|
"which could not be found on this machine. Run `pip "
|
|
"install tabulate` to install the library.")
|
|
|
|
assert self._is_proped, "Please call `interp.run(input)` before calling `interp.summary()`."
|
|
|
|
# Build up a list of summary information for each node
|
|
node_summaries: List[List[Any]] = []
|
|
|
|
def mem_repr(mem: int) -> str:
|
|
unit_divisor_map = {
|
|
'kb': 1024,
|
|
'mb': 1024**2,
|
|
'gb': 1024**3,
|
|
'tb': 1024**4,
|
|
}
|
|
return f"{mem / unit_divisor_map[unit.lower()]:.2f} {unit.upper()}"
|
|
|
|
def flops_repr(flop: int) -> str:
|
|
return f"{flop:,} FLOPs"
|
|
|
|
for node in self.module.graph.nodes:
|
|
node: Node
|
|
node_summaries.append([
|
|
node.op,
|
|
str(node),
|
|
flops_repr(node.meta['fwd_flop']),
|
|
flops_repr(node.meta['bwd_flop']),
|
|
mem_repr(calculate_fwd_in(node)),
|
|
mem_repr(calculate_fwd_out(node)),
|
|
mem_repr(calculate_fwd_tmp(node)),
|
|
mem_repr(node.meta['bwd_mem_out']),
|
|
mem_repr(node.meta['bwd_mem_tmp']),
|
|
])
|
|
|
|
# Use the ``tabulate`` library to create a well-formatted table
|
|
# presenting our summary information
|
|
headers: List[str] = [
|
|
'Op type',
|
|
'Op',
|
|
'Forward FLOPs',
|
|
'Backward FLOPs',
|
|
'FWD_IN',
|
|
'FWD_OUT',
|
|
'FWD_TMP',
|
|
'BWD_OUT',
|
|
'BWD_TMP',
|
|
]
|
|
|
|
return tabulate(node_summaries, headers=headers, stralign='right')
|
|
|
|
|
|
def metainfo_trace(gm: torch.fx.GraphModule, *args, verbose: bool = False, unit: str = "MB", **kwargs) -> None:
|
|
"""
|
|
MetaInfo tracing API
|
|
|
|
Given a ``GraphModule`` and a sample input, this API will trace the MetaInfo of a single training cycle,
|
|
and annotate them on ``gm.graph``.
|
|
|
|
Uses:
|
|
>>> model = ...
|
|
>>> gm = symbolic_trace(model)
|
|
>>> args = ... # sample input to the ``GraphModule``
|
|
>>> metainfo_trace(gm, *args)
|
|
|
|
Args:
|
|
gm (torch.fx.GraphModule): The ``GraphModule`` to be annotated with MetaInfo.
|
|
verbose (bool, optional): Whether to show ``MetaInfoProp.summary()`. Defaults to False.
|
|
unit (str, optional): The unit of memory. Defaults to "MB".
|
|
|
|
Returns:
|
|
torch.fx.GraphModule: The ``GraphModule`` annotated with MetaInfo.
|
|
"""
|
|
device = torch.device('cuda:0') if torch.cuda.is_available() else torch.device('cpu')
|
|
interp = MetaInfoProp(gm.to(device))
|
|
if is_compatible_with_meta():
|
|
from colossalai.fx.profiler import MetaTensor
|
|
args = tree_map(lambda x: MetaTensor(x, fake_device=device), args)
|
|
kwargs = tree_map(lambda x: MetaTensor(x, fake_device=device), kwargs)
|
|
interp.propagate(*args, **kwargs)
|
|
if verbose:
|
|
interp.summary(unit)
|
|
gm.to('cpu')
|
|
del interp
|
|
return gm
|