ColossalAI/colossalai/gemini/gemini_mgr.py
Boyuan Yao 7a58dc5ad2
Update metainfo patch branch (#2517)
* init

* rename and remove useless func

* basic chunk

* add evoformer

* align evoformer

* add meta

* basic chunk

* basic memory

* finish basic inference memory estimation

* finish memory estimation

* fix bug

* finish memory estimation

* add part of index tracer

* finish basic index tracer

* add doc string

* add doc str

* polish code

* polish code

* update active log

* polish code

* add possible region search

* finish region search loop

* finish chunk define

* support new op

* rename index tracer

* finishi codegen on msa

* redesign index tracer, add source and change compute

* pass outproduct mean

* code format

* code format

* work with outerproductmean and msa

* code style

* code style

* code style

* code style

* change threshold

* support check_index_duplicate

* support index dupilictae and update loop

* support output

* update memory estimate

* optimise search

* fix layernorm

* move flow tracer

* refactor flow tracer

* format code

* refactor flow search

* code style

* adapt codegen to prepose node

* code style

* remove abandoned function

* remove flow tracer

* code style

* code style

* reorder nodes

* finish node reorder

* update run

* code style

* add chunk select class

* add chunk select

* code style

* add chunksize in emit, fix bug in reassgin shape

* code style

* turn off print mem

* add evoformer openfold init

* init openfold

* add benchmark

* add print

* code style

* code style

* init openfold

* update openfold

* align openfold

* use max_mem to control stratge

* update source add

* add reorder in mem estimator

* improve reorder efficeincy

* support ones_like, add prompt if fit mode search fail

* fix a bug in ones like, dont gen chunk if dim size is 1

* fix bug again

* update min memory stratege, reduce mem usage by 30%

* last version of benchmark

* refactor structure

* restruct dir

* update test

* rename

* take apart chunk code gen

* close mem and code print

* code format

* rename ambiguous variable

* seperate flow tracer

* seperate input node dim search

* seperate prepose_nodes

* seperate non chunk input

* seperate reorder

* rename

* ad reorder graph

* seperate trace flow

* code style

* code style

* fix typo

* set benchmark

* rename test

* update codegen test

* Fix state_dict key missing issue of the ZeroDDP (#2363)

* Fix state_dict output for ZeroDDP duplicated parameters

* Rewrite state_dict based on get_static_torch_model

* Modify get_static_torch_model to be compatible with the lower version (ZeroDDP)

* update codegen test

* update codegen test

* add chunk search test

* code style

* add available

* [hotfix] fix gpt gemini example (#2404)

* [hotfix] fix gpt gemini example

* [example] add new assertions

* remove autochunk_available

* [workflow] added nightly release to pypi (#2403)

* add comments

* code style

* add doc for search chunk

* [doc] updated readme regarding pypi installation (#2406)

* add doc for search

* [doc] updated kernel-related optimisers' docstring (#2385)

* [doc] updated kernel-related optimisers' docstring

* polish doc

* rename trace_index to trace_indice

* rename function from index to indice

* rename

* rename in doc

* [polish] polish code for get_static_torch_model (#2405)

* [gemini] polish code

* [testing] remove code

* [gemini] make more robust

* rename

* rename

* remove useless function

* [worfklow] added coverage test (#2399)

* [worfklow] added coverage test

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* add doc for trace indice

* [docker] updated Dockerfile and release workflow (#2410)

* add doc

* update doc

* add available

* change imports

* add test in import

* [workflow] refactored the example check workflow (#2411)

* [workflow] refactored the example check workflow

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* Update parallel_context.py (#2408)

* [hotfix] add DISTPAN argument for benchmark (#2412)

* change the benchmark config file

* change config

* revert config file

* rename distpan to distplan

* [workflow] added precommit check for code consistency (#2401)

* [workflow] added precommit check for code consistency

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* adapt new fx

* [workflow] added translation for non-english comments (#2414)

* [setup] refactored setup.py for dependency graph (#2413)

* change import

* update doc

* [workflow] auto comment if precommit check fails (#2417)

* [hotfix] add norm clearing for the overflow step (#2416)

* [examples] adding tflops to PaLM (#2365)

* [workflow]auto comment with test coverage report (#2419)

* [workflow]auto comment with test coverage report

* polish code

* polish yaml

* [doc] added documentation for CI/CD (#2420)

* [doc] added documentation for CI/CD

* polish markdown

* polish markdown

* polish markdown

* [example] removed duplicated stable diffusion example (#2424)

* [zero] add inference mode and its unit test (#2418)

* [workflow] report test coverage even if below threshold (#2431)

* [example] improved the clarity yof the example readme (#2427)

* [example] improved the clarity yof the example readme

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* [ddp] add is_ddp_ignored (#2434)

[ddp] rename to is_ddp_ignored

* [workflow] make test coverage report collapsable (#2436)

* [autoparallel] add shard option (#2423)

* [fx] allow native ckpt trace and codegen. (#2438)

* [cli] provided more details if colossalai run fail (#2442)

* [autoparallel] integrate device mesh initialization into autoparallelize (#2393)

* [autoparallel] integrate device mesh initialization into autoparallelize

* add megatron solution

* update gpt autoparallel examples with latest api

* adapt beta value to fit the current computation cost

* [zero] fix state_dict and load_state_dict for ddp ignored parameters (#2443)

* [ddp] add is_ddp_ignored

[ddp] rename to is_ddp_ignored

* [zero] fix state_dict and load_state_dict

* fix bugs

* [zero] update unit test for ZeroDDP

* [example] updated the hybrid parallel tutorial (#2444)

* [example] updated the hybrid parallel tutorial

* polish code

* [zero] add warning for ignored parameters (#2446)

* [example] updated large-batch optimizer tutorial (#2448)

* [example] updated large-batch optimizer tutorial

* polish code

* polish code

* [example] fixed seed error in train_dreambooth_colossalai.py (#2445)

* [workflow] fixed the on-merge condition check (#2452)

* [workflow] automated the compatiblity test (#2453)

* [workflow] automated the compatiblity test

* polish code

* [autoparallel] update binary elementwise handler (#2451)

* [autoparallel] update binary elementwise handler

* polish

* [workflow] automated bdist wheel build (#2459)

* [workflow] automated bdist wheel build

* polish workflow

* polish readme

* polish readme

* Fix False warning in initialize.py (#2456)

* Update initialize.py

* pre-commit run check

* [examples] update autoparallel tutorial demo (#2449)

* [examples] update autoparallel tutorial demo

* add test_ci.sh

* polish

* add conda yaml

* [cli] fixed hostname mismatch error (#2465)

* [example] integrate autoparallel demo with CI (#2466)

* [example] integrate autoparallel demo with CI

* polish code

* polish code

* polish code

* polish code

* [zero] low level optim supports ProcessGroup (#2464)

* [example] update vit ci script (#2469)

* [example] update vit ci script

* [example] update requirements

* [example] update requirements

* [example] integrate seq-parallel tutorial with CI (#2463)

* [zero] polish low level optimizer (#2473)

* polish pp middleware (#2476)

Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>

* [example] update gpt gemini example ci test (#2477)

* [zero] add unit test for low-level zero init (#2474)

* [workflow] fixed the skip condition of  example weekly check workflow (#2481)

* [example] stable diffusion add roadmap

* add dummy test_ci.sh

* [example] stable diffusion add roadmap (#2482)

* [CI] add test_ci.sh for palm, opt and gpt (#2475)

* polish code

* [example] titans for gpt

* polish readme

* remove license

* polish code

* update readme

* [example] titans for gpt (#2484)

* [autoparallel] support origin activation ckpt on autoprallel system (#2468)

* [autochunk] support evoformer tracer (#2485)

support full evoformer tracer, which is a main module of alphafold. previously we just support a simplifed version of it.
1. support some evoformer's op in fx
2. support evoformer test
3. add repos for test code

* [example] fix requirements (#2488)

* [zero] add unit testings for hybrid parallelism  (#2486)

* [hotfix] gpt example titans bug #2493

* polish code and fix dataloader bugs

* [hotfix] gpt example titans bug #2493 (#2494)

* [fx] allow control of ckpt_codegen init (#2498)

* [fx] allow control of ckpt_codegen init

Currently in ColoGraphModule, ActivationCheckpointCodeGen will be set automatically in __init__. But other codegen can't be set if so. 
So I add an arg to control whether to set ActivationCheckpointCodeGen in __init__.

* code style

* [example] dreambooth example

* add test_ci.sh to dreambooth

* [autochunk] support autochunk on evoformer (#2497)

* Revert "Update parallel_context.py (#2408)"

This reverts commit 7d5640b9db.

* add avg partition (#2483)

Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>

* [auto-chunk] support extramsa (#3) (#2504)

* [utils] lazy init. (#2148)

* [utils] lazy init.

* [utils] remove description.

* [utils] complete.

* [utils] finalize.

* [utils] fix names.

* [autochunk] support parsing blocks (#2506)

* [zero] add strict ddp mode (#2508)

* [zero] add strict ddp mode

* [polish] add comments for strict ddp mode

* [zero] fix test error

* [doc] update opt and tutorial links (#2509)

* [workflow] fixed changed file detection (#2515)

Co-authored-by: oahzxl <xuanlei.zhao@gmail.com>
Co-authored-by: eric8607242 <e0928021388@gmail.com>
Co-authored-by: HELSON <c2h214748@gmail.com>
Co-authored-by: Frank Lee <somerlee.9@gmail.com>
Co-authored-by: Haofan Wang <haofanwang.ai@gmail.com>
Co-authored-by: Jiarui Fang <fangjiarui123@gmail.com>
Co-authored-by: ZijianYY <119492445+ZijianYY@users.noreply.github.com>
Co-authored-by: YuliangLiu0306 <72588413+YuliangLiu0306@users.noreply.github.com>
Co-authored-by: Super Daniel <78588128+super-dainiu@users.noreply.github.com>
Co-authored-by: ver217 <lhx0217@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang97@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>
Co-authored-by: oahzxl <43881818+oahzxl@users.noreply.github.com>
Co-authored-by: binmakeswell <binmakeswell@gmail.com>
Co-authored-by: Fazzie-Maqianli <55798671+Fazziekey@users.noreply.github.com>
Co-authored-by: アマデウス <kurisusnowdeng@users.noreply.github.com>
2023-01-27 09:52:21 +08:00

163 lines
6.4 KiB
Python

import functools
from time import time
from typing import List, Optional, Tuple
import torch
from colossalai.gemini.chunk import Chunk, ChunkManager
from colossalai.gemini.memory_tracer import MemStats
from .memory_tracer import ChunkMemStatsCollector
from .placement_policy import PlacementPolicyFactory
class GeminiManager:
"""
Stateful Tensor Manager, inspired from PatrickStar
PatrickStar: Parallel Training of Pre-trained Models via Chunk-based Memory Management
https://arxiv.org/abs/2108.05818
Args:
placement_policy (str): Which device to place *held* tensors. It can be 'cpu', 'cuda' and 'auto'.
If it's 'cpu', parameters, gradients and optimizer states will be offloaded to CPU, which means min CUDA memory will be used.
If it's 'cuda', they won't be offloaded, which means max CUDA memory will be used.
If it's 'auto', they are moving dynamically based on CPU and CUDA memory usage. It will utilize heterogeneous memory space evenly and well.
Note that 'auto' policy can only work well when no other processes use CUDA during your training.
chunk_manager (ChunkManager): A ``ChunkManager`` instance.
memstats (MemStats, optional): a mem stats collected by a runtime mem tracer. if None then GeminiManager will collect it during a warmup iteration.
"""
def __init__(self, placement_policy: str, chunk_manager: ChunkManager, memstats: Optional[MemStats] = None) -> None:
assert placement_policy in PlacementPolicyFactory.get_policy_names()
self.policy_name = placement_policy
policy_cls = PlacementPolicyFactory.create(placement_policy)
self._chunk_manager = chunk_manager
self._premade_memstats_ = memstats is not None
self._memstats = memstats
self._mem_stats_collector = ChunkMemStatsCollector(chunk_manager,
self._memstats) if policy_cls.need_mem_stats else None
self._placement_policy = policy_cls(chunk_manager, self._mem_stats_collector)
self._compute_list: List[Tuple[Chunk, ...]] = []
self._compute_idx: int = -1
self._h2d_volume = 0
self._d2h_volume = 0
self._layout_time = 0
self._evict_time = 0
self._warmup = True
self._comp_cuda_demand_time = 0
def reset_attributes(self):
self._compute_idx = -1
self._h2d_volume = 0
self._d2h_volume = 0
self._layout_time = 0
self._evict_time = 0
self._comp_cuda_demand_time = 0
def is_warmup(self):
return self._warmup
def memstats(self):
"""memstats
get the memory statistics during training.
The stats could be collected by a runtime memory tracer, or collected by the GeminiManager.
Note, for the latter, you can not access the memstats before warmup iteration finishes.
"""
if self._premade_memstats_:
return self._memstats
else:
assert not self._warmup, "Gemini Manager has memstats after warm up! Now is during warmup."
return self._mem_stats_collector._memstats
def pre_iter(self, *args):
if self._mem_stats_collector and self._warmup:
self._mem_stats_collector.start_collection()
def post_iter(self):
"""This function must be called when each iteration finishes
"""
if self._mem_stats_collector and self._warmup:
self._mem_stats_collector.finish_collection()
self._warmup = False
self.reset_attributes()
def adjust_layout(self, chunks: Tuple[Chunk, ...]) -> None:
""" Adjust the layout of stateful tensors according to the information provided
by mem_stats_collector, which should belongs to a Sharded Model.
"""
# find stateful tensor in state COMPUTE
start = time()
self._record_chunks_order(chunks)
cuda_demand, hold_cuda_tensor_list = self._get_layout_info(self._compute_idx, self._warmup, chunks)
self._layout_time += time() - start
vol, evict_time = self._placement_policy.evict_tensors(can_evict_chunks=hold_cuda_tensor_list,
cuda_demand=cuda_demand,
warmup=self._warmup,
compute_list=self._compute_list,
compute_idx=self._compute_idx)
self._d2h_volume += vol
self._evict_time += evict_time
# move COMPUTE tensors to CUDA
self._h2d_volume += cuda_demand
@functools.lru_cache(maxsize=None)
def _get_layout_info(self, compute_idx: int, warmup: bool, chunks: Tuple[Chunk, ...]):
start = time()
cuda_demand = 0
for chunk in chunks:
if chunk.device_type == 'cuda':
if chunk.is_gathered:
pass
else:
cuda_demand += chunk.chunk_mem - chunk.shard_mem
elif chunk.device_type == 'cpu':
cuda_demand += chunk.chunk_mem
else:
raise RuntimeError
self._comp_cuda_demand_time += time() - start
can_evict_chunks = self._chunk_manager.get_cuda_movable_chunks()
return cuda_demand, can_evict_chunks
def _record_chunks_order(self, chunks: Tuple[Chunk, ...]) -> None:
self._compute_idx += 1
if self._warmup and self._placement_policy.need_mem_stats:
self._compute_list.append(chunks)
@property
def default_device(self):
return self._placement_policy.get_default_device()
def sample_overall_data(self):
if self._mem_stats_collector:
self._mem_stats_collector.sample_overall_data()
def record_model_data_volume(self):
if self._mem_stats_collector:
self._mem_stats_collector.record_model_data_volume()
@property
def chunk_manager(self):
return self._chunk_manager
@property
def cuda_margin_mem(self) -> Optional[float]:
if self._mem_stats_collector:
return self._mem_stats_collector.cuda_margin_mem
return None
@property
def is_cuda_margin_mem_avail(self) -> bool:
return self._placement_policy.need_mem_stats
@staticmethod
def get_default_device(policy_name: str) -> torch.device:
return PlacementPolicyFactory.get_default_device(policy_name)