Files
ColossalAI/examples/language/palm/train.py
Boyuan Yao 7a58dc5ad2 Update metainfo patch branch (#2517)
* init

* rename and remove useless func

* basic chunk

* add evoformer

* align evoformer

* add meta

* basic chunk

* basic memory

* finish basic inference memory estimation

* finish memory estimation

* fix bug

* finish memory estimation

* add part of index tracer

* finish basic index tracer

* add doc string

* add doc str

* polish code

* polish code

* update active log

* polish code

* add possible region search

* finish region search loop

* finish chunk define

* support new op

* rename index tracer

* finishi codegen on msa

* redesign index tracer, add source and change compute

* pass outproduct mean

* code format

* code format

* work with outerproductmean and msa

* code style

* code style

* code style

* code style

* change threshold

* support check_index_duplicate

* support index dupilictae and update loop

* support output

* update memory estimate

* optimise search

* fix layernorm

* move flow tracer

* refactor flow tracer

* format code

* refactor flow search

* code style

* adapt codegen to prepose node

* code style

* remove abandoned function

* remove flow tracer

* code style

* code style

* reorder nodes

* finish node reorder

* update run

* code style

* add chunk select class

* add chunk select

* code style

* add chunksize in emit, fix bug in reassgin shape

* code style

* turn off print mem

* add evoformer openfold init

* init openfold

* add benchmark

* add print

* code style

* code style

* init openfold

* update openfold

* align openfold

* use max_mem to control stratge

* update source add

* add reorder in mem estimator

* improve reorder efficeincy

* support ones_like, add prompt if fit mode search fail

* fix a bug in ones like, dont gen chunk if dim size is 1

* fix bug again

* update min memory stratege, reduce mem usage by 30%

* last version of benchmark

* refactor structure

* restruct dir

* update test

* rename

* take apart chunk code gen

* close mem and code print

* code format

* rename ambiguous variable

* seperate flow tracer

* seperate input node dim search

* seperate prepose_nodes

* seperate non chunk input

* seperate reorder

* rename

* ad reorder graph

* seperate trace flow

* code style

* code style

* fix typo

* set benchmark

* rename test

* update codegen test

* Fix state_dict key missing issue of the ZeroDDP (#2363)

* Fix state_dict output for ZeroDDP duplicated parameters

* Rewrite state_dict based on get_static_torch_model

* Modify get_static_torch_model to be compatible with the lower version (ZeroDDP)

* update codegen test

* update codegen test

* add chunk search test

* code style

* add available

* [hotfix] fix gpt gemini example (#2404)

* [hotfix] fix gpt gemini example

* [example] add new assertions

* remove autochunk_available

* [workflow] added nightly release to pypi (#2403)

* add comments

* code style

* add doc for search chunk

* [doc] updated readme regarding pypi installation (#2406)

* add doc for search

* [doc] updated kernel-related optimisers' docstring (#2385)

* [doc] updated kernel-related optimisers' docstring

* polish doc

* rename trace_index to trace_indice

* rename function from index to indice

* rename

* rename in doc

* [polish] polish code for get_static_torch_model (#2405)

* [gemini] polish code

* [testing] remove code

* [gemini] make more robust

* rename

* rename

* remove useless function

* [worfklow] added coverage test (#2399)

* [worfklow] added coverage test

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* add doc for trace indice

* [docker] updated Dockerfile and release workflow (#2410)

* add doc

* update doc

* add available

* change imports

* add test in import

* [workflow] refactored the example check workflow (#2411)

* [workflow] refactored the example check workflow

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* Update parallel_context.py (#2408)

* [hotfix] add DISTPAN argument for benchmark (#2412)

* change the benchmark config file

* change config

* revert config file

* rename distpan to distplan

* [workflow] added precommit check for code consistency (#2401)

* [workflow] added precommit check for code consistency

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* adapt new fx

* [workflow] added translation for non-english comments (#2414)

* [setup] refactored setup.py for dependency graph (#2413)

* change import

* update doc

* [workflow] auto comment if precommit check fails (#2417)

* [hotfix] add norm clearing for the overflow step (#2416)

* [examples] adding tflops to PaLM (#2365)

* [workflow]auto comment with test coverage report (#2419)

* [workflow]auto comment with test coverage report

* polish code

* polish yaml

* [doc] added documentation for CI/CD (#2420)

* [doc] added documentation for CI/CD

* polish markdown

* polish markdown

* polish markdown

* [example] removed duplicated stable diffusion example (#2424)

* [zero] add inference mode and its unit test (#2418)

* [workflow] report test coverage even if below threshold (#2431)

* [example] improved the clarity yof the example readme (#2427)

* [example] improved the clarity yof the example readme

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* [ddp] add is_ddp_ignored (#2434)

[ddp] rename to is_ddp_ignored

* [workflow] make test coverage report collapsable (#2436)

* [autoparallel] add shard option (#2423)

* [fx] allow native ckpt trace and codegen. (#2438)

* [cli] provided more details if colossalai run fail (#2442)

* [autoparallel] integrate device mesh initialization into autoparallelize (#2393)

* [autoparallel] integrate device mesh initialization into autoparallelize

* add megatron solution

* update gpt autoparallel examples with latest api

* adapt beta value to fit the current computation cost

* [zero] fix state_dict and load_state_dict for ddp ignored parameters (#2443)

* [ddp] add is_ddp_ignored

[ddp] rename to is_ddp_ignored

* [zero] fix state_dict and load_state_dict

* fix bugs

* [zero] update unit test for ZeroDDP

* [example] updated the hybrid parallel tutorial (#2444)

* [example] updated the hybrid parallel tutorial

* polish code

* [zero] add warning for ignored parameters (#2446)

* [example] updated large-batch optimizer tutorial (#2448)

* [example] updated large-batch optimizer tutorial

* polish code

* polish code

* [example] fixed seed error in train_dreambooth_colossalai.py (#2445)

* [workflow] fixed the on-merge condition check (#2452)

* [workflow] automated the compatiblity test (#2453)

* [workflow] automated the compatiblity test

* polish code

* [autoparallel] update binary elementwise handler (#2451)

* [autoparallel] update binary elementwise handler

* polish

* [workflow] automated bdist wheel build (#2459)

* [workflow] automated bdist wheel build

* polish workflow

* polish readme

* polish readme

* Fix False warning in initialize.py (#2456)

* Update initialize.py

* pre-commit run check

* [examples] update autoparallel tutorial demo (#2449)

* [examples] update autoparallel tutorial demo

* add test_ci.sh

* polish

* add conda yaml

* [cli] fixed hostname mismatch error (#2465)

* [example] integrate autoparallel demo with CI (#2466)

* [example] integrate autoparallel demo with CI

* polish code

* polish code

* polish code

* polish code

* [zero] low level optim supports ProcessGroup (#2464)

* [example] update vit ci script (#2469)

* [example] update vit ci script

* [example] update requirements

* [example] update requirements

* [example] integrate seq-parallel tutorial with CI (#2463)

* [zero] polish low level optimizer (#2473)

* polish pp middleware (#2476)

Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>

* [example] update gpt gemini example ci test (#2477)

* [zero] add unit test for low-level zero init (#2474)

* [workflow] fixed the skip condition of  example weekly check workflow (#2481)

* [example] stable diffusion add roadmap

* add dummy test_ci.sh

* [example] stable diffusion add roadmap (#2482)

* [CI] add test_ci.sh for palm, opt and gpt (#2475)

* polish code

* [example] titans for gpt

* polish readme

* remove license

* polish code

* update readme

* [example] titans for gpt (#2484)

* [autoparallel] support origin activation ckpt on autoprallel system (#2468)

* [autochunk] support evoformer tracer (#2485)

support full evoformer tracer, which is a main module of alphafold. previously we just support a simplifed version of it.
1. support some evoformer's op in fx
2. support evoformer test
3. add repos for test code

* [example] fix requirements (#2488)

* [zero] add unit testings for hybrid parallelism  (#2486)

* [hotfix] gpt example titans bug #2493

* polish code and fix dataloader bugs

* [hotfix] gpt example titans bug #2493 (#2494)

* [fx] allow control of ckpt_codegen init (#2498)

* [fx] allow control of ckpt_codegen init

Currently in ColoGraphModule, ActivationCheckpointCodeGen will be set automatically in __init__. But other codegen can't be set if so. 
So I add an arg to control whether to set ActivationCheckpointCodeGen in __init__.

* code style

* [example] dreambooth example

* add test_ci.sh to dreambooth

* [autochunk] support autochunk on evoformer (#2497)

* Revert "Update parallel_context.py (#2408)"

This reverts commit 7d5640b9db.

* add avg partition (#2483)

Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>

* [auto-chunk] support extramsa (#3) (#2504)

* [utils] lazy init. (#2148)

* [utils] lazy init.

* [utils] remove description.

* [utils] complete.

* [utils] finalize.

* [utils] fix names.

* [autochunk] support parsing blocks (#2506)

* [zero] add strict ddp mode (#2508)

* [zero] add strict ddp mode

* [polish] add comments for strict ddp mode

* [zero] fix test error

* [doc] update opt and tutorial links (#2509)

* [workflow] fixed changed file detection (#2515)

Co-authored-by: oahzxl <xuanlei.zhao@gmail.com>
Co-authored-by: eric8607242 <e0928021388@gmail.com>
Co-authored-by: HELSON <c2h214748@gmail.com>
Co-authored-by: Frank Lee <somerlee.9@gmail.com>
Co-authored-by: Haofan Wang <haofanwang.ai@gmail.com>
Co-authored-by: Jiarui Fang <fangjiarui123@gmail.com>
Co-authored-by: ZijianYY <119492445+ZijianYY@users.noreply.github.com>
Co-authored-by: YuliangLiu0306 <72588413+YuliangLiu0306@users.noreply.github.com>
Co-authored-by: Super Daniel <78588128+super-dainiu@users.noreply.github.com>
Co-authored-by: ver217 <lhx0217@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang97@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>
Co-authored-by: oahzxl <43881818+oahzxl@users.noreply.github.com>
Co-authored-by: binmakeswell <binmakeswell@gmail.com>
Co-authored-by: Fazzie-Maqianli <55798671+Fazziekey@users.noreply.github.com>
Co-authored-by: アマデウス <kurisusnowdeng@users.noreply.github.com>
2023-01-27 09:52:21 +08:00

311 lines
10 KiB
Python

import gzip
import random
from functools import partial
from time import time
import numpy as np
import torch
import torch.nn as nn
import torch.optim as optim
import tqdm
from packaging import version
from palm_pytorch import PaLM
from palm_pytorch.autoregressive_wrapper import AutoregressiveWrapper
from torch.utils.data import DataLoader, Dataset
import colossalai
from colossalai.logging import disable_existing_loggers, get_dist_logger
from colossalai.nn.optimizer.gemini_optimizer import GeminiAdamOptimizer
from colossalai.nn.parallel import ZeroDDP
from colossalai.tensor import ColoParameter, ComputePattern, ComputeSpec, ProcessGroup, ReplicaSpec, ShardSpec
from colossalai.utils import MultiTimer, get_current_device
from colossalai.utils.model.colo_init_context import ColoInitContext
# constants
NUM_BATCHES = int(10)
WARMUP_BATCHES = 1
GRADIENT_ACCUMULATE_EVERY = 1
LEARNING_RATE = 2e-4
VALIDATE_EVERY = 100
GENERATE_EVERY = 500
GENERATE_LENGTH = 512
SEQ_LEN = 1024
def parse_args():
parser = colossalai.get_default_parser()
parser.add_argument(
"--distplan",
type=str,
default='colossalai',
help="The distributed plan [colossalai, pytorch].",
)
parser.add_argument(
"--tp_degree",
type=int,
default=1,
help="Tensor Parallelism Degree. Valid when using colossalai as dist plan.",
)
parser.add_argument(
"--placement",
type=str,
default='cpu',
help="Placement Policy for Gemini. Valid when using colossalai as dist plan.",
)
parser.add_argument(
"--shardinit",
type=bool,
default=False,
help=
"Shard the tensors when init the model to shrink peak memory size on the assigned device. Valid when using colossalai as dist plan.",
)
parser.add_argument(
"--batch_size",
type=int,
default=8,
help="batch size per DP group of training.",
)
parser.add_argument(
"--dummy_data",
type=bool,
default=False,
help="use dummy dataset.",
)
args = parser.parse_args()
return args
# helpers
def cycle(loader):
while True:
for data in loader:
yield data
def decode_token(token):
return str(chr(max(32, token)))
def get_tflops(model_numel, batch_size, seq_len, step_time):
return model_numel * batch_size * seq_len * 8 / 1e12 / (step_time + 1e-12)
def decode_tokens(tokens):
return "".join(list(map(decode_token, tokens)))
def get_model_size(model: nn.Module):
total_numel = 0
for module in model.modules():
for p in module.parameters(recurse=False):
total_numel += p.numel()
return total_numel
# Gemini + ZeRO DDP
def gemini_zero_dpp(model: torch.nn.Module, pg: ProcessGroup, placememt_policy: str = "auto"):
cai_version = colossalai.__version__
if version.parse(cai_version) > version.parse("0.1.10"):
from colossalai.nn.parallel import GeminiDDP
model = GeminiDDP(model,
device=get_current_device(),
placement_policy=placememt_policy,
pin_memory=True,
search_range_mb=32)
elif version.parse(cai_version) <= version.parse("0.1.10") and version.parse(cai_version) >= version.parse("0.1.9"):
from colossalai.gemini import ChunkManager, GeminiManager
chunk_size = ChunkManager.search_chunk_size(model, 64 * 1024**2, 32)
gemini_manager = GeminiManager(placememt_policy, chunk_manager)
chunk_manager = ChunkManager(chunk_size,
pg,
enable_distributed_storage=True,
init_device=GeminiManager.get_default_device(placememt_policy))
model = ZeroDDP(model, gemini_manager)
else:
raise NotImplemented(f"CAI version {cai_version} is not supported")
return model
## Parameter Sharding Strategies for Tensor Parallelism
def split_param_single_dim_tp1d(dim: int, param: ColoParameter, pg: ProcessGroup):
spec = (ShardSpec([dim], [pg.tp_world_size()]), ComputeSpec(ComputePattern.TP1D))
param.set_tensor_spec(*spec)
def split_param_row_tp1d(param: ColoParameter, pg: ProcessGroup):
split_param_single_dim_tp1d(0, param, pg)
def split_param_col_tp1d(param: ColoParameter, pg: ProcessGroup):
split_param_single_dim_tp1d(-1, param, pg)
# Tensor Parallel
def tensor_parallelize(model: torch.nn.Module, pg: ProcessGroup):
"""tensor_parallelize
Sharding the Model Parameters.
Args:
model (torch.nn.Module): a torch module to be sharded
"""
for mn, module in model.named_modules():
for pn, param in module.named_parameters(recurse=False):
if hasattr(param, 'visited'):
continue
param.set_dist_spec(ReplicaSpec())
if 'net.0' in mn:
split_param_col_tp1d(param, pg) # colmn slice
elif 'to_q' in mn:
split_param_col_tp1d(param, pg) # colmn slice
elif 'to_kv' in mn:
split_param_row_tp1d(param, pg) # row slice
elif 'to_out' in mn:
split_param_row_tp1d(param, pg) # row slice
elif '1.1' in mn:
split_param_col_tp1d(param, pg) # colmn slice
elif '1.2' in mn:
split_param_row_tp1d(param, pg) # row slice
else:
param.set_dist_spec(ReplicaSpec())
param.visited = True
args = parse_args()
if args.distplan not in ["colossalai", "pytorch"]:
raise TypeError(f"{args.distplan} is error")
disable_existing_loggers()
colossalai.launch_from_torch(config={})
logger = get_dist_logger()
def generate_dataset(dummy_data: bool = False):
if not dummy_data:
with gzip.open("./data/enwik8.gz") as file:
X = np.fromstring(file.read(int(95e6)), dtype=np.uint8)
trX, vaX = np.split(X, [int(90e6)])
data_train, data_val = torch.from_numpy(trX), torch.from_numpy(vaX)
# print(f"data_train {data_train.shape} {data_train.dtype} {max(data_train)} {min(data_train)}")
# print(f"data_val {data_val.shape} {data_val.dtype} {max(data_val)} {min(data_val)}")
return data_train, data_val
else:
return torch.randint(0, 100, (90000000,)), torch.randint(0, 100, (5000000,))
data_train, data_val = generate_dataset(args.dummy_data)
print("generate dataset ready!")
class TextSamplerDataset(Dataset):
def __init__(self, data, seq_len):
super().__init__()
self.data = data
self.seq_len = seq_len
def __getitem__(self, index):
rand_start = torch.randint(0, self.data.size(0) - self.seq_len, (1,))
full_seq = self.data[rand_start:rand_start + self.seq_len + 1].long()
return full_seq.cuda()
def __len__(self):
return self.data.size(0) // self.seq_len
train_dataset = TextSamplerDataset(data_train, SEQ_LEN)
val_dataset = TextSamplerDataset(data_val, SEQ_LEN)
train_loader = cycle(DataLoader(train_dataset, batch_size=args.batch_size))
val_loader = cycle(DataLoader(val_dataset, batch_size=args.batch_size))
if args.distplan == "colossalai":
# instantiate GPT-like decoder model
default_pg = ProcessGroup(tp_degree=args.tp_degree)
default_dist_spec = ShardSpec([-1], [args.tp_degree]) if args.shardinit else None
ctx = ColoInitContext(device='cpu', default_dist_spec=default_dist_spec, default_pg=default_pg)
with ctx:
model = PaLM(num_tokens=50304, dim=4096, depth=64)
model = AutoregressiveWrapper(model, max_seq_len=SEQ_LEN)
pg = default_pg
tensor_parallelize(model, pg)
model = gemini_zero_dpp(model, pg, args.placement)
#optimizer
#optimizer = GeminiAdamOptimizer(model, lr=1e-7, initial_scale=2**5)
optimizer = GeminiAdamOptimizer(model, lr=LEARNING_RATE, initial_scale=2**5)
else:
model = PaLM(num_tokens=256, dim=512, depth=8)
model = AutoregressiveWrapper(model, max_seq_len=2048)
model.cuda()
optim = torch.optim.Adam(model.parameters(), lr=LEARNING_RATE)
# model is shared after TP
numel = get_model_size(model)
get_tflops_func = partial(get_tflops, numel, args.batch_size, SEQ_LEN)
# training
model.train()
tflops_list = []
for i in tqdm.tqdm(range(NUM_BATCHES), mininterval=10.0, desc="training"):
if args.distplan == "colossalai":
optimizer.zero_grad()
start = time()
loss = model(next(train_loader))
fwd_end = time()
fwd_time = fwd_end - start
# loss.backward()
optimizer.backward(loss)
bwd_end = time()
bwd_time = bwd_end - fwd_end
# print(f"training loss: {loss.item()}")
torch.nn.utils.clip_grad_norm_(model.parameters(), 0.5)
# optim.step()
# optim.zero_grad()
optimizer.step()
optim_time = time() - bwd_end
step_time = time() - start
step_tflops = get_tflops_func(step_time)
logger.info(
f"[{i + 1}/{NUM_BATCHES}] Loss:{loss.item():.3f}, Step time: {step_time:.3f}s, TFLOPS: {get_tflops_func(step_time):.3f}, FWD time: {fwd_time:.3f}s, BWD time: {bwd_time:.3f}s, OPTIM time: {optim_time:.3f}s",
ranks=[0],
)
if i >= WARMUP_BATCHES:
tflops_list.append(step_tflops)
else:
for __ in range(GRADIENT_ACCUMULATE_EVERY):
loss = model(next(train_loader))
loss.backward()
print(f"training loss: {loss.item()}")
torch.nn.utils.clip_grad_norm_(model.parameters(), 0.5)
optim.step()
optim.zero_grad()
tflops_list.sort()
median_index = ((NUM_BATCHES - WARMUP_BATCHES) >> 1) + WARMUP_BATCHES
logger.info(f"Median TFLOPS is {tflops_list[median_index]:.3f}")
# TODO
# if i % VALIDATE_EVERY == 0:
# model.eval()
# with torch.no_grad():
# loss = model(next(val_loader))
# print(f"validation loss: {loss.item()}")
# if i % GENERATE_EVERY == 0:
# model.eval()
# inp = random.choice(val_dataset)[:-1]
# prime = decode_tokens(inp)
# print(f"%s \n\n %s", (prime, "*" * 100))
# sample = model.generate(inp[None, ...], GENERATE_LENGTH)
# output_str = decode_tokens(sample[0])
# print(output_str)