mirror of
https://github.com/hpcaitech/ColossalAI.git
synced 2026-07-16 17:16:14 +00:00
* init
* rename and remove useless func
* basic chunk
* add evoformer
* align evoformer
* add meta
* basic chunk
* basic memory
* finish basic inference memory estimation
* finish memory estimation
* fix bug
* finish memory estimation
* add part of index tracer
* finish basic index tracer
* add doc string
* add doc str
* polish code
* polish code
* update active log
* polish code
* add possible region search
* finish region search loop
* finish chunk define
* support new op
* rename index tracer
* finishi codegen on msa
* redesign index tracer, add source and change compute
* pass outproduct mean
* code format
* code format
* work with outerproductmean and msa
* code style
* code style
* code style
* code style
* change threshold
* support check_index_duplicate
* support index dupilictae and update loop
* support output
* update memory estimate
* optimise search
* fix layernorm
* move flow tracer
* refactor flow tracer
* format code
* refactor flow search
* code style
* adapt codegen to prepose node
* code style
* remove abandoned function
* remove flow tracer
* code style
* code style
* reorder nodes
* finish node reorder
* update run
* code style
* add chunk select class
* add chunk select
* code style
* add chunksize in emit, fix bug in reassgin shape
* code style
* turn off print mem
* add evoformer openfold init
* init openfold
* add benchmark
* add print
* code style
* code style
* init openfold
* update openfold
* align openfold
* use max_mem to control stratge
* update source add
* add reorder in mem estimator
* improve reorder efficeincy
* support ones_like, add prompt if fit mode search fail
* fix a bug in ones like, dont gen chunk if dim size is 1
* fix bug again
* update min memory stratege, reduce mem usage by 30%
* last version of benchmark
* refactor structure
* restruct dir
* update test
* rename
* take apart chunk code gen
* close mem and code print
* code format
* rename ambiguous variable
* seperate flow tracer
* seperate input node dim search
* seperate prepose_nodes
* seperate non chunk input
* seperate reorder
* rename
* ad reorder graph
* seperate trace flow
* code style
* code style
* fix typo
* set benchmark
* rename test
* update codegen test
* Fix state_dict key missing issue of the ZeroDDP (#2363)
* Fix state_dict output for ZeroDDP duplicated parameters
* Rewrite state_dict based on get_static_torch_model
* Modify get_static_torch_model to be compatible with the lower version (ZeroDDP)
* update codegen test
* update codegen test
* add chunk search test
* code style
* add available
* [hotfix] fix gpt gemini example (#2404)
* [hotfix] fix gpt gemini example
* [example] add new assertions
* remove autochunk_available
* [workflow] added nightly release to pypi (#2403)
* add comments
* code style
* add doc for search chunk
* [doc] updated readme regarding pypi installation (#2406)
* add doc for search
* [doc] updated kernel-related optimisers' docstring (#2385)
* [doc] updated kernel-related optimisers' docstring
* polish doc
* rename trace_index to trace_indice
* rename function from index to indice
* rename
* rename in doc
* [polish] polish code for get_static_torch_model (#2405)
* [gemini] polish code
* [testing] remove code
* [gemini] make more robust
* rename
* rename
* remove useless function
* [worfklow] added coverage test (#2399)
* [worfklow] added coverage test
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* add doc for trace indice
* [docker] updated Dockerfile and release workflow (#2410)
* add doc
* update doc
* add available
* change imports
* add test in import
* [workflow] refactored the example check workflow (#2411)
* [workflow] refactored the example check workflow
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* Update parallel_context.py (#2408)
* [hotfix] add DISTPAN argument for benchmark (#2412)
* change the benchmark config file
* change config
* revert config file
* rename distpan to distplan
* [workflow] added precommit check for code consistency (#2401)
* [workflow] added precommit check for code consistency
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* polish code
* adapt new fx
* [workflow] added translation for non-english comments (#2414)
* [setup] refactored setup.py for dependency graph (#2413)
* change import
* update doc
* [workflow] auto comment if precommit check fails (#2417)
* [hotfix] add norm clearing for the overflow step (#2416)
* [examples] adding tflops to PaLM (#2365)
* [workflow]auto comment with test coverage report (#2419)
* [workflow]auto comment with test coverage report
* polish code
* polish yaml
* [doc] added documentation for CI/CD (#2420)
* [doc] added documentation for CI/CD
* polish markdown
* polish markdown
* polish markdown
* [example] removed duplicated stable diffusion example (#2424)
* [zero] add inference mode and its unit test (#2418)
* [workflow] report test coverage even if below threshold (#2431)
* [example] improved the clarity yof the example readme (#2427)
* [example] improved the clarity yof the example readme
* polish workflow
* polish workflow
* polish workflow
* polish workflow
* polish workflow
* polish workflow
* [ddp] add is_ddp_ignored (#2434)
[ddp] rename to is_ddp_ignored
* [workflow] make test coverage report collapsable (#2436)
* [autoparallel] add shard option (#2423)
* [fx] allow native ckpt trace and codegen. (#2438)
* [cli] provided more details if colossalai run fail (#2442)
* [autoparallel] integrate device mesh initialization into autoparallelize (#2393)
* [autoparallel] integrate device mesh initialization into autoparallelize
* add megatron solution
* update gpt autoparallel examples with latest api
* adapt beta value to fit the current computation cost
* [zero] fix state_dict and load_state_dict for ddp ignored parameters (#2443)
* [ddp] add is_ddp_ignored
[ddp] rename to is_ddp_ignored
* [zero] fix state_dict and load_state_dict
* fix bugs
* [zero] update unit test for ZeroDDP
* [example] updated the hybrid parallel tutorial (#2444)
* [example] updated the hybrid parallel tutorial
* polish code
* [zero] add warning for ignored parameters (#2446)
* [example] updated large-batch optimizer tutorial (#2448)
* [example] updated large-batch optimizer tutorial
* polish code
* polish code
* [example] fixed seed error in train_dreambooth_colossalai.py (#2445)
* [workflow] fixed the on-merge condition check (#2452)
* [workflow] automated the compatiblity test (#2453)
* [workflow] automated the compatiblity test
* polish code
* [autoparallel] update binary elementwise handler (#2451)
* [autoparallel] update binary elementwise handler
* polish
* [workflow] automated bdist wheel build (#2459)
* [workflow] automated bdist wheel build
* polish workflow
* polish readme
* polish readme
* Fix False warning in initialize.py (#2456)
* Update initialize.py
* pre-commit run check
* [examples] update autoparallel tutorial demo (#2449)
* [examples] update autoparallel tutorial demo
* add test_ci.sh
* polish
* add conda yaml
* [cli] fixed hostname mismatch error (#2465)
* [example] integrate autoparallel demo with CI (#2466)
* [example] integrate autoparallel demo with CI
* polish code
* polish code
* polish code
* polish code
* [zero] low level optim supports ProcessGroup (#2464)
* [example] update vit ci script (#2469)
* [example] update vit ci script
* [example] update requirements
* [example] update requirements
* [example] integrate seq-parallel tutorial with CI (#2463)
* [zero] polish low level optimizer (#2473)
* polish pp middleware (#2476)
Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>
* [example] update gpt gemini example ci test (#2477)
* [zero] add unit test for low-level zero init (#2474)
* [workflow] fixed the skip condition of example weekly check workflow (#2481)
* [example] stable diffusion add roadmap
* add dummy test_ci.sh
* [example] stable diffusion add roadmap (#2482)
* [CI] add test_ci.sh for palm, opt and gpt (#2475)
* polish code
* [example] titans for gpt
* polish readme
* remove license
* polish code
* update readme
* [example] titans for gpt (#2484)
* [autoparallel] support origin activation ckpt on autoprallel system (#2468)
* [autochunk] support evoformer tracer (#2485)
support full evoformer tracer, which is a main module of alphafold. previously we just support a simplifed version of it.
1. support some evoformer's op in fx
2. support evoformer test
3. add repos for test code
* [example] fix requirements (#2488)
* [zero] add unit testings for hybrid parallelism (#2486)
* [hotfix] gpt example titans bug #2493
* polish code and fix dataloader bugs
* [hotfix] gpt example titans bug #2493 (#2494)
* [fx] allow control of ckpt_codegen init (#2498)
* [fx] allow control of ckpt_codegen init
Currently in ColoGraphModule, ActivationCheckpointCodeGen will be set automatically in __init__. But other codegen can't be set if so.
So I add an arg to control whether to set ActivationCheckpointCodeGen in __init__.
* code style
* [example] dreambooth example
* add test_ci.sh to dreambooth
* [autochunk] support autochunk on evoformer (#2497)
* Revert "Update parallel_context.py (#2408)"
This reverts commit 7d5640b9db.
* add avg partition (#2483)
Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>
* [auto-chunk] support extramsa (#3) (#2504)
* [utils] lazy init. (#2148)
* [utils] lazy init.
* [utils] remove description.
* [utils] complete.
* [utils] finalize.
* [utils] fix names.
* [autochunk] support parsing blocks (#2506)
* [zero] add strict ddp mode (#2508)
* [zero] add strict ddp mode
* [polish] add comments for strict ddp mode
* [zero] fix test error
* [doc] update opt and tutorial links (#2509)
* [workflow] fixed changed file detection (#2515)
Co-authored-by: oahzxl <xuanlei.zhao@gmail.com>
Co-authored-by: eric8607242 <e0928021388@gmail.com>
Co-authored-by: HELSON <c2h214748@gmail.com>
Co-authored-by: Frank Lee <somerlee.9@gmail.com>
Co-authored-by: Haofan Wang <haofanwang.ai@gmail.com>
Co-authored-by: Jiarui Fang <fangjiarui123@gmail.com>
Co-authored-by: ZijianYY <119492445+ZijianYY@users.noreply.github.com>
Co-authored-by: YuliangLiu0306 <72588413+YuliangLiu0306@users.noreply.github.com>
Co-authored-by: Super Daniel <78588128+super-dainiu@users.noreply.github.com>
Co-authored-by: ver217 <lhx0217@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang97@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>
Co-authored-by: oahzxl <43881818+oahzxl@users.noreply.github.com>
Co-authored-by: binmakeswell <binmakeswell@gmail.com>
Co-authored-by: Fazzie-Maqianli <55798671+Fazziekey@users.noreply.github.com>
Co-authored-by: アマデウス <kurisusnowdeng@users.noreply.github.com>
311 lines
10 KiB
Python
311 lines
10 KiB
Python
import gzip
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import random
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from functools import partial
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from time import time
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import numpy as np
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import torch
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import torch.nn as nn
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import torch.optim as optim
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import tqdm
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from packaging import version
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from palm_pytorch import PaLM
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from palm_pytorch.autoregressive_wrapper import AutoregressiveWrapper
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from torch.utils.data import DataLoader, Dataset
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import colossalai
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from colossalai.logging import disable_existing_loggers, get_dist_logger
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from colossalai.nn.optimizer.gemini_optimizer import GeminiAdamOptimizer
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from colossalai.nn.parallel import ZeroDDP
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from colossalai.tensor import ColoParameter, ComputePattern, ComputeSpec, ProcessGroup, ReplicaSpec, ShardSpec
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from colossalai.utils import MultiTimer, get_current_device
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from colossalai.utils.model.colo_init_context import ColoInitContext
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# constants
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NUM_BATCHES = int(10)
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WARMUP_BATCHES = 1
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GRADIENT_ACCUMULATE_EVERY = 1
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LEARNING_RATE = 2e-4
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VALIDATE_EVERY = 100
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GENERATE_EVERY = 500
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GENERATE_LENGTH = 512
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SEQ_LEN = 1024
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def parse_args():
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parser = colossalai.get_default_parser()
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parser.add_argument(
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"--distplan",
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type=str,
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default='colossalai',
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help="The distributed plan [colossalai, pytorch].",
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)
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parser.add_argument(
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"--tp_degree",
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type=int,
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default=1,
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help="Tensor Parallelism Degree. Valid when using colossalai as dist plan.",
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)
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parser.add_argument(
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"--placement",
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type=str,
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default='cpu',
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help="Placement Policy for Gemini. Valid when using colossalai as dist plan.",
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)
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parser.add_argument(
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"--shardinit",
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type=bool,
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default=False,
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help=
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"Shard the tensors when init the model to shrink peak memory size on the assigned device. Valid when using colossalai as dist plan.",
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)
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parser.add_argument(
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"--batch_size",
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type=int,
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default=8,
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help="batch size per DP group of training.",
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)
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parser.add_argument(
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"--dummy_data",
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type=bool,
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default=False,
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help="use dummy dataset.",
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)
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args = parser.parse_args()
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return args
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# helpers
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def cycle(loader):
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while True:
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for data in loader:
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yield data
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def decode_token(token):
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return str(chr(max(32, token)))
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def get_tflops(model_numel, batch_size, seq_len, step_time):
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return model_numel * batch_size * seq_len * 8 / 1e12 / (step_time + 1e-12)
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def decode_tokens(tokens):
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return "".join(list(map(decode_token, tokens)))
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def get_model_size(model: nn.Module):
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total_numel = 0
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for module in model.modules():
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for p in module.parameters(recurse=False):
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total_numel += p.numel()
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return total_numel
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# Gemini + ZeRO DDP
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def gemini_zero_dpp(model: torch.nn.Module, pg: ProcessGroup, placememt_policy: str = "auto"):
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cai_version = colossalai.__version__
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if version.parse(cai_version) > version.parse("0.1.10"):
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from colossalai.nn.parallel import GeminiDDP
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model = GeminiDDP(model,
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device=get_current_device(),
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placement_policy=placememt_policy,
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pin_memory=True,
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search_range_mb=32)
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elif version.parse(cai_version) <= version.parse("0.1.10") and version.parse(cai_version) >= version.parse("0.1.9"):
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from colossalai.gemini import ChunkManager, GeminiManager
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chunk_size = ChunkManager.search_chunk_size(model, 64 * 1024**2, 32)
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gemini_manager = GeminiManager(placememt_policy, chunk_manager)
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chunk_manager = ChunkManager(chunk_size,
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pg,
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enable_distributed_storage=True,
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init_device=GeminiManager.get_default_device(placememt_policy))
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model = ZeroDDP(model, gemini_manager)
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else:
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raise NotImplemented(f"CAI version {cai_version} is not supported")
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return model
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## Parameter Sharding Strategies for Tensor Parallelism
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def split_param_single_dim_tp1d(dim: int, param: ColoParameter, pg: ProcessGroup):
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spec = (ShardSpec([dim], [pg.tp_world_size()]), ComputeSpec(ComputePattern.TP1D))
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param.set_tensor_spec(*spec)
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def split_param_row_tp1d(param: ColoParameter, pg: ProcessGroup):
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split_param_single_dim_tp1d(0, param, pg)
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def split_param_col_tp1d(param: ColoParameter, pg: ProcessGroup):
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split_param_single_dim_tp1d(-1, param, pg)
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# Tensor Parallel
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def tensor_parallelize(model: torch.nn.Module, pg: ProcessGroup):
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"""tensor_parallelize
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Sharding the Model Parameters.
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Args:
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model (torch.nn.Module): a torch module to be sharded
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"""
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for mn, module in model.named_modules():
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for pn, param in module.named_parameters(recurse=False):
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if hasattr(param, 'visited'):
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continue
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param.set_dist_spec(ReplicaSpec())
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if 'net.0' in mn:
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split_param_col_tp1d(param, pg) # colmn slice
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elif 'to_q' in mn:
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split_param_col_tp1d(param, pg) # colmn slice
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elif 'to_kv' in mn:
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split_param_row_tp1d(param, pg) # row slice
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elif 'to_out' in mn:
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split_param_row_tp1d(param, pg) # row slice
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elif '1.1' in mn:
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split_param_col_tp1d(param, pg) # colmn slice
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elif '1.2' in mn:
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split_param_row_tp1d(param, pg) # row slice
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else:
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param.set_dist_spec(ReplicaSpec())
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param.visited = True
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args = parse_args()
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if args.distplan not in ["colossalai", "pytorch"]:
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raise TypeError(f"{args.distplan} is error")
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disable_existing_loggers()
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colossalai.launch_from_torch(config={})
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logger = get_dist_logger()
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def generate_dataset(dummy_data: bool = False):
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if not dummy_data:
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with gzip.open("./data/enwik8.gz") as file:
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X = np.fromstring(file.read(int(95e6)), dtype=np.uint8)
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trX, vaX = np.split(X, [int(90e6)])
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data_train, data_val = torch.from_numpy(trX), torch.from_numpy(vaX)
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# print(f"data_train {data_train.shape} {data_train.dtype} {max(data_train)} {min(data_train)}")
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# print(f"data_val {data_val.shape} {data_val.dtype} {max(data_val)} {min(data_val)}")
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return data_train, data_val
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else:
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return torch.randint(0, 100, (90000000,)), torch.randint(0, 100, (5000000,))
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data_train, data_val = generate_dataset(args.dummy_data)
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print("generate dataset ready!")
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class TextSamplerDataset(Dataset):
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def __init__(self, data, seq_len):
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super().__init__()
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self.data = data
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self.seq_len = seq_len
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def __getitem__(self, index):
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rand_start = torch.randint(0, self.data.size(0) - self.seq_len, (1,))
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full_seq = self.data[rand_start:rand_start + self.seq_len + 1].long()
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return full_seq.cuda()
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def __len__(self):
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return self.data.size(0) // self.seq_len
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train_dataset = TextSamplerDataset(data_train, SEQ_LEN)
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val_dataset = TextSamplerDataset(data_val, SEQ_LEN)
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train_loader = cycle(DataLoader(train_dataset, batch_size=args.batch_size))
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val_loader = cycle(DataLoader(val_dataset, batch_size=args.batch_size))
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if args.distplan == "colossalai":
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# instantiate GPT-like decoder model
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default_pg = ProcessGroup(tp_degree=args.tp_degree)
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default_dist_spec = ShardSpec([-1], [args.tp_degree]) if args.shardinit else None
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ctx = ColoInitContext(device='cpu', default_dist_spec=default_dist_spec, default_pg=default_pg)
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with ctx:
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model = PaLM(num_tokens=50304, dim=4096, depth=64)
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model = AutoregressiveWrapper(model, max_seq_len=SEQ_LEN)
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pg = default_pg
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tensor_parallelize(model, pg)
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model = gemini_zero_dpp(model, pg, args.placement)
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#optimizer
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#optimizer = GeminiAdamOptimizer(model, lr=1e-7, initial_scale=2**5)
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optimizer = GeminiAdamOptimizer(model, lr=LEARNING_RATE, initial_scale=2**5)
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else:
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model = PaLM(num_tokens=256, dim=512, depth=8)
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model = AutoregressiveWrapper(model, max_seq_len=2048)
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model.cuda()
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optim = torch.optim.Adam(model.parameters(), lr=LEARNING_RATE)
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# model is shared after TP
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numel = get_model_size(model)
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get_tflops_func = partial(get_tflops, numel, args.batch_size, SEQ_LEN)
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# training
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model.train()
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tflops_list = []
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for i in tqdm.tqdm(range(NUM_BATCHES), mininterval=10.0, desc="training"):
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if args.distplan == "colossalai":
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optimizer.zero_grad()
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start = time()
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loss = model(next(train_loader))
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fwd_end = time()
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fwd_time = fwd_end - start
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# loss.backward()
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optimizer.backward(loss)
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bwd_end = time()
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bwd_time = bwd_end - fwd_end
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# print(f"training loss: {loss.item()}")
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torch.nn.utils.clip_grad_norm_(model.parameters(), 0.5)
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# optim.step()
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# optim.zero_grad()
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optimizer.step()
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optim_time = time() - bwd_end
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step_time = time() - start
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|
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step_tflops = get_tflops_func(step_time)
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logger.info(
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f"[{i + 1}/{NUM_BATCHES}] Loss:{loss.item():.3f}, Step time: {step_time:.3f}s, TFLOPS: {get_tflops_func(step_time):.3f}, FWD time: {fwd_time:.3f}s, BWD time: {bwd_time:.3f}s, OPTIM time: {optim_time:.3f}s",
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|
ranks=[0],
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|
)
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|
if i >= WARMUP_BATCHES:
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|
tflops_list.append(step_tflops)
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|
|
|
else:
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|
for __ in range(GRADIENT_ACCUMULATE_EVERY):
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|
loss = model(next(train_loader))
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|
loss.backward()
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|
|
|
print(f"training loss: {loss.item()}")
|
|
torch.nn.utils.clip_grad_norm_(model.parameters(), 0.5)
|
|
optim.step()
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|
optim.zero_grad()
|
|
|
|
tflops_list.sort()
|
|
median_index = ((NUM_BATCHES - WARMUP_BATCHES) >> 1) + WARMUP_BATCHES
|
|
logger.info(f"Median TFLOPS is {tflops_list[median_index]:.3f}")
|
|
|
|
# TODO
|
|
# if i % VALIDATE_EVERY == 0:
|
|
# model.eval()
|
|
# with torch.no_grad():
|
|
# loss = model(next(val_loader))
|
|
# print(f"validation loss: {loss.item()}")
|
|
|
|
# if i % GENERATE_EVERY == 0:
|
|
# model.eval()
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|
# inp = random.choice(val_dataset)[:-1]
|
|
# prime = decode_tokens(inp)
|
|
# print(f"%s \n\n %s", (prime, "*" * 100))
|
|
|
|
# sample = model.generate(inp[None, ...], GENERATE_LENGTH)
|
|
# output_str = decode_tokens(sample[0])
|
|
# print(output_str)
|