Files
ColossalAI/setup.py
Boyuan Yao 7a58dc5ad2 Update metainfo patch branch (#2517)
* init

* rename and remove useless func

* basic chunk

* add evoformer

* align evoformer

* add meta

* basic chunk

* basic memory

* finish basic inference memory estimation

* finish memory estimation

* fix bug

* finish memory estimation

* add part of index tracer

* finish basic index tracer

* add doc string

* add doc str

* polish code

* polish code

* update active log

* polish code

* add possible region search

* finish region search loop

* finish chunk define

* support new op

* rename index tracer

* finishi codegen on msa

* redesign index tracer, add source and change compute

* pass outproduct mean

* code format

* code format

* work with outerproductmean and msa

* code style

* code style

* code style

* code style

* change threshold

* support check_index_duplicate

* support index dupilictae and update loop

* support output

* update memory estimate

* optimise search

* fix layernorm

* move flow tracer

* refactor flow tracer

* format code

* refactor flow search

* code style

* adapt codegen to prepose node

* code style

* remove abandoned function

* remove flow tracer

* code style

* code style

* reorder nodes

* finish node reorder

* update run

* code style

* add chunk select class

* add chunk select

* code style

* add chunksize in emit, fix bug in reassgin shape

* code style

* turn off print mem

* add evoformer openfold init

* init openfold

* add benchmark

* add print

* code style

* code style

* init openfold

* update openfold

* align openfold

* use max_mem to control stratge

* update source add

* add reorder in mem estimator

* improve reorder efficeincy

* support ones_like, add prompt if fit mode search fail

* fix a bug in ones like, dont gen chunk if dim size is 1

* fix bug again

* update min memory stratege, reduce mem usage by 30%

* last version of benchmark

* refactor structure

* restruct dir

* update test

* rename

* take apart chunk code gen

* close mem and code print

* code format

* rename ambiguous variable

* seperate flow tracer

* seperate input node dim search

* seperate prepose_nodes

* seperate non chunk input

* seperate reorder

* rename

* ad reorder graph

* seperate trace flow

* code style

* code style

* fix typo

* set benchmark

* rename test

* update codegen test

* Fix state_dict key missing issue of the ZeroDDP (#2363)

* Fix state_dict output for ZeroDDP duplicated parameters

* Rewrite state_dict based on get_static_torch_model

* Modify get_static_torch_model to be compatible with the lower version (ZeroDDP)

* update codegen test

* update codegen test

* add chunk search test

* code style

* add available

* [hotfix] fix gpt gemini example (#2404)

* [hotfix] fix gpt gemini example

* [example] add new assertions

* remove autochunk_available

* [workflow] added nightly release to pypi (#2403)

* add comments

* code style

* add doc for search chunk

* [doc] updated readme regarding pypi installation (#2406)

* add doc for search

* [doc] updated kernel-related optimisers' docstring (#2385)

* [doc] updated kernel-related optimisers' docstring

* polish doc

* rename trace_index to trace_indice

* rename function from index to indice

* rename

* rename in doc

* [polish] polish code for get_static_torch_model (#2405)

* [gemini] polish code

* [testing] remove code

* [gemini] make more robust

* rename

* rename

* remove useless function

* [worfklow] added coverage test (#2399)

* [worfklow] added coverage test

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* add doc for trace indice

* [docker] updated Dockerfile and release workflow (#2410)

* add doc

* update doc

* add available

* change imports

* add test in import

* [workflow] refactored the example check workflow (#2411)

* [workflow] refactored the example check workflow

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* Update parallel_context.py (#2408)

* [hotfix] add DISTPAN argument for benchmark (#2412)

* change the benchmark config file

* change config

* revert config file

* rename distpan to distplan

* [workflow] added precommit check for code consistency (#2401)

* [workflow] added precommit check for code consistency

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* polish code

* adapt new fx

* [workflow] added translation for non-english comments (#2414)

* [setup] refactored setup.py for dependency graph (#2413)

* change import

* update doc

* [workflow] auto comment if precommit check fails (#2417)

* [hotfix] add norm clearing for the overflow step (#2416)

* [examples] adding tflops to PaLM (#2365)

* [workflow]auto comment with test coverage report (#2419)

* [workflow]auto comment with test coverage report

* polish code

* polish yaml

* [doc] added documentation for CI/CD (#2420)

* [doc] added documentation for CI/CD

* polish markdown

* polish markdown

* polish markdown

* [example] removed duplicated stable diffusion example (#2424)

* [zero] add inference mode and its unit test (#2418)

* [workflow] report test coverage even if below threshold (#2431)

* [example] improved the clarity yof the example readme (#2427)

* [example] improved the clarity yof the example readme

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* polish workflow

* [ddp] add is_ddp_ignored (#2434)

[ddp] rename to is_ddp_ignored

* [workflow] make test coverage report collapsable (#2436)

* [autoparallel] add shard option (#2423)

* [fx] allow native ckpt trace and codegen. (#2438)

* [cli] provided more details if colossalai run fail (#2442)

* [autoparallel] integrate device mesh initialization into autoparallelize (#2393)

* [autoparallel] integrate device mesh initialization into autoparallelize

* add megatron solution

* update gpt autoparallel examples with latest api

* adapt beta value to fit the current computation cost

* [zero] fix state_dict and load_state_dict for ddp ignored parameters (#2443)

* [ddp] add is_ddp_ignored

[ddp] rename to is_ddp_ignored

* [zero] fix state_dict and load_state_dict

* fix bugs

* [zero] update unit test for ZeroDDP

* [example] updated the hybrid parallel tutorial (#2444)

* [example] updated the hybrid parallel tutorial

* polish code

* [zero] add warning for ignored parameters (#2446)

* [example] updated large-batch optimizer tutorial (#2448)

* [example] updated large-batch optimizer tutorial

* polish code

* polish code

* [example] fixed seed error in train_dreambooth_colossalai.py (#2445)

* [workflow] fixed the on-merge condition check (#2452)

* [workflow] automated the compatiblity test (#2453)

* [workflow] automated the compatiblity test

* polish code

* [autoparallel] update binary elementwise handler (#2451)

* [autoparallel] update binary elementwise handler

* polish

* [workflow] automated bdist wheel build (#2459)

* [workflow] automated bdist wheel build

* polish workflow

* polish readme

* polish readme

* Fix False warning in initialize.py (#2456)

* Update initialize.py

* pre-commit run check

* [examples] update autoparallel tutorial demo (#2449)

* [examples] update autoparallel tutorial demo

* add test_ci.sh

* polish

* add conda yaml

* [cli] fixed hostname mismatch error (#2465)

* [example] integrate autoparallel demo with CI (#2466)

* [example] integrate autoparallel demo with CI

* polish code

* polish code

* polish code

* polish code

* [zero] low level optim supports ProcessGroup (#2464)

* [example] update vit ci script (#2469)

* [example] update vit ci script

* [example] update requirements

* [example] update requirements

* [example] integrate seq-parallel tutorial with CI (#2463)

* [zero] polish low level optimizer (#2473)

* polish pp middleware (#2476)

Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>

* [example] update gpt gemini example ci test (#2477)

* [zero] add unit test for low-level zero init (#2474)

* [workflow] fixed the skip condition of  example weekly check workflow (#2481)

* [example] stable diffusion add roadmap

* add dummy test_ci.sh

* [example] stable diffusion add roadmap (#2482)

* [CI] add test_ci.sh for palm, opt and gpt (#2475)

* polish code

* [example] titans for gpt

* polish readme

* remove license

* polish code

* update readme

* [example] titans for gpt (#2484)

* [autoparallel] support origin activation ckpt on autoprallel system (#2468)

* [autochunk] support evoformer tracer (#2485)

support full evoformer tracer, which is a main module of alphafold. previously we just support a simplifed version of it.
1. support some evoformer's op in fx
2. support evoformer test
3. add repos for test code

* [example] fix requirements (#2488)

* [zero] add unit testings for hybrid parallelism  (#2486)

* [hotfix] gpt example titans bug #2493

* polish code and fix dataloader bugs

* [hotfix] gpt example titans bug #2493 (#2494)

* [fx] allow control of ckpt_codegen init (#2498)

* [fx] allow control of ckpt_codegen init

Currently in ColoGraphModule, ActivationCheckpointCodeGen will be set automatically in __init__. But other codegen can't be set if so. 
So I add an arg to control whether to set ActivationCheckpointCodeGen in __init__.

* code style

* [example] dreambooth example

* add test_ci.sh to dreambooth

* [autochunk] support autochunk on evoformer (#2497)

* Revert "Update parallel_context.py (#2408)"

This reverts commit 7d5640b9db.

* add avg partition (#2483)

Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>

* [auto-chunk] support extramsa (#3) (#2504)

* [utils] lazy init. (#2148)

* [utils] lazy init.

* [utils] remove description.

* [utils] complete.

* [utils] finalize.

* [utils] fix names.

* [autochunk] support parsing blocks (#2506)

* [zero] add strict ddp mode (#2508)

* [zero] add strict ddp mode

* [polish] add comments for strict ddp mode

* [zero] fix test error

* [doc] update opt and tutorial links (#2509)

* [workflow] fixed changed file detection (#2515)

Co-authored-by: oahzxl <xuanlei.zhao@gmail.com>
Co-authored-by: eric8607242 <e0928021388@gmail.com>
Co-authored-by: HELSON <c2h214748@gmail.com>
Co-authored-by: Frank Lee <somerlee.9@gmail.com>
Co-authored-by: Haofan Wang <haofanwang.ai@gmail.com>
Co-authored-by: Jiarui Fang <fangjiarui123@gmail.com>
Co-authored-by: ZijianYY <119492445+ZijianYY@users.noreply.github.com>
Co-authored-by: YuliangLiu0306 <72588413+YuliangLiu0306@users.noreply.github.com>
Co-authored-by: Super Daniel <78588128+super-dainiu@users.noreply.github.com>
Co-authored-by: ver217 <lhx0217@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang97@gmail.com>
Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com>
Co-authored-by: oahzxl <43881818+oahzxl@users.noreply.github.com>
Co-authored-by: binmakeswell <binmakeswell@gmail.com>
Co-authored-by: Fazzie-Maqianli <55798671+Fazziekey@users.noreply.github.com>
Co-authored-by: アマデウス <kurisusnowdeng@users.noreply.github.com>
2023-01-27 09:52:21 +08:00

204 lines
8.2 KiB
Python

import os
import re
from datetime import datetime
from setuptools import find_packages, setup
from op_builder.utils import get_cuda_bare_metal_version
try:
import torch
from torch.utils.cpp_extension import CUDA_HOME, BuildExtension, CUDAExtension
print("\n\ntorch.__version__ = {}\n\n".format(torch.__version__))
TORCH_MAJOR = int(torch.__version__.split('.')[0])
TORCH_MINOR = int(torch.__version__.split('.')[1])
if TORCH_MAJOR < 1 or (TORCH_MAJOR == 1 and TORCH_MINOR < 10):
raise RuntimeError("Colossal-AI requires Pytorch 1.10 or newer.\n"
"The latest stable release can be obtained from https://pytorch.org/")
TORCH_AVAILABLE = True
except ImportError:
TORCH_AVAILABLE = False
CUDA_HOME = None
# ninja build does not work unless include_dirs are abs path
this_dir = os.path.dirname(os.path.abspath(__file__))
build_cuda_ext = False
ext_modules = []
is_nightly = int(os.environ.get('NIGHTLY', '0')) == 1
if int(os.environ.get('CUDA_EXT', '0')) == 1:
if not TORCH_AVAILABLE:
raise ModuleNotFoundError(
"PyTorch is not found while CUDA_EXT=1. You need to install PyTorch first in order to build CUDA extensions"
)
if not CUDA_HOME:
raise RuntimeError(
"CUDA_HOME is not found while CUDA_EXT=1. You need to export CUDA_HOME environment vairable or install CUDA Toolkit first in order to build CUDA extensions"
)
build_cuda_ext = True
def check_cuda_torch_binary_vs_bare_metal(cuda_dir):
raw_output, bare_metal_major, bare_metal_minor = get_cuda_bare_metal_version(cuda_dir)
torch_binary_major = torch.version.cuda.split(".")[0]
torch_binary_minor = torch.version.cuda.split(".")[1]
print("\nCompiling cuda extensions with")
print(raw_output + "from " + cuda_dir + "/bin\n")
if bare_metal_major != torch_binary_major:
print(f'The detected CUDA version ({raw_output}) mismatches the version that was used to compile PyTorch '
f'({torch.version.cuda}). CUDA extension will not be installed.')
return False
if bare_metal_minor != torch_binary_minor:
print("\nWarning: Cuda extensions are being compiled with a version of Cuda that does "
"not match the version used to compile Pytorch binaries. "
f"Pytorch binaries were compiled with Cuda {torch.version.cuda}.\n"
"In some cases, a minor-version mismatch will not cause later errors: "
"https://github.com/NVIDIA/apex/pull/323#discussion_r287021798. ")
return True
def check_cuda_availability(cuda_dir):
if not torch.cuda.is_available():
# https://github.com/NVIDIA/apex/issues/486
# Extension builds after https://github.com/pytorch/pytorch/pull/23408 attempt to query
# torch.cuda.get_device_capability(), which will fail if you are compiling in an environment
# without visible GPUs (e.g. during an nvidia-docker build command).
print(
'\nWarning: Torch did not find available GPUs on this system.\n',
'If your intention is to cross-compile, this is not an error.\n'
'By default, Colossal-AI will cross-compile for Pascal (compute capabilities 6.0, 6.1, 6.2),\n'
'Volta (compute capability 7.0), Turing (compute capability 7.5),\n'
'and, if the CUDA version is >= 11.0, Ampere (compute capability 8.0).\n'
'If you wish to cross-compile for a single specific architecture,\n'
'export TORCH_CUDA_ARCH_LIST="compute capability" before running setup.py.\n')
if os.environ.get("TORCH_CUDA_ARCH_LIST", None) is None:
_, bare_metal_major, _ = get_cuda_bare_metal_version(cuda_dir)
if int(bare_metal_major) == 11:
os.environ["TORCH_CUDA_ARCH_LIST"] = "6.0;6.1;6.2;7.0;7.5;8.0"
else:
os.environ["TORCH_CUDA_ARCH_LIST"] = "6.0;6.1;6.2;7.0;7.5"
return False
if cuda_dir is None:
print("nvcc was not found. CUDA extension will not be installed. If you're installing within a container from "
"https://hub.docker.com/r/pytorch/pytorch, only images whose names contain 'devel' will provide nvcc.")
return False
return True
def append_nvcc_threads(nvcc_extra_args):
_, bare_metal_major, bare_metal_minor = get_cuda_bare_metal_version(CUDA_HOME)
if int(bare_metal_major) >= 11 and int(bare_metal_minor) >= 2:
return nvcc_extra_args + ["--threads", "4"]
return nvcc_extra_args
def fetch_requirements(path):
with open(path, 'r') as fd:
return [r.strip() for r in fd.readlines()]
def fetch_readme():
with open('README.md', encoding='utf-8') as f:
return f.read()
def get_version():
setup_file_path = os.path.abspath(__file__)
project_path = os.path.dirname(setup_file_path)
version_txt_path = os.path.join(project_path, 'version.txt')
version_py_path = os.path.join(project_path, 'colossalai/version.py')
with open(version_txt_path) as f:
version = f.read().strip()
if build_cuda_ext:
torch_version = '.'.join(torch.__version__.split('.')[:2])
cuda_version = '.'.join(get_cuda_bare_metal_version(CUDA_HOME)[1:])
version += f'+torch{torch_version}cu{cuda_version}'
# write version into version.py
with open(version_py_path, 'w') as f:
f.write(f"__version__ = '{version}'\n")
return version
if build_cuda_ext:
build_cuda_ext = check_cuda_availability(CUDA_HOME) and check_cuda_torch_binary_vs_bare_metal(CUDA_HOME)
if build_cuda_ext:
# Set up macros for forward/backward compatibility hack around
# https://github.com/pytorch/pytorch/commit/4404762d7dd955383acee92e6f06b48144a0742e
# and
# https://github.com/NVIDIA/apex/issues/456
# https://github.com/pytorch/pytorch/commit/eb7b39e02f7d75c26d8a795ea8c7fd911334da7e#diff-4632522f237f1e4e728cb824300403ac
from op_builder import ALL_OPS
for name, builder_cls in ALL_OPS.items():
print(f'===== Building Extension {name} =====')
ext_modules.append(builder_cls().builder())
# always put not nightly branch as the if branch
# otherwise github will treat colossalai-nightly as the project name
# and it will mess up with the dependency graph insights
if not is_nightly:
version = get_version()
package_name = 'colossalai'
else:
# use date as the nightly version
version = datetime.today().strftime('%Y.%m.%d')
package_name = 'colossalai-nightly'
setup(name=package_name,
version=version,
packages=find_packages(exclude=(
'benchmark',
'docker',
'tests',
'docs',
'examples',
'tests',
'scripts',
'requirements',
'*.egg-info',
)),
description='An integrated large-scale model training system with efficient parallelization techniques',
long_description=fetch_readme(),
long_description_content_type='text/markdown',
license='Apache Software License 2.0',
url='https://www.colossalai.org',
project_urls={
'Forum': 'https://github.com/hpcaitech/ColossalAI/discussions',
'Bug Tracker': 'https://github.com/hpcaitech/ColossalAI/issues',
'Examples': 'https://github.com/hpcaitech/ColossalAI-Examples',
'Documentation': 'http://colossalai.readthedocs.io',
'Github': 'https://github.com/hpcaitech/ColossalAI',
},
ext_modules=ext_modules,
cmdclass={'build_ext': BuildExtension} if ext_modules else {},
install_requires=fetch_requirements('requirements/requirements.txt'),
entry_points='''
[console_scripts]
colossalai=colossalai.cli:cli
''',
python_requires='>=3.6',
classifiers=[
'Programming Language :: Python :: 3',
'License :: OSI Approved :: Apache Software License',
'Environment :: GPU :: NVIDIA CUDA',
'Topic :: Scientific/Engineering :: Artificial Intelligence',
'Topic :: System :: Distributed Computing',
],
package_data={
'colossalai': [
'_C/*.pyi', 'kernel/cuda_native/csrc/*', 'kernel/cuda_native/csrc/kernel/*',
'kernel/cuda_native/csrc/kernels/include/*'
]
})