diff --git a/packages/dbgpt-core/src/dbgpt/storage/base.py b/packages/dbgpt-core/src/dbgpt/storage/base.py
index 80cd84ac8..112612c17 100644
--- a/packages/dbgpt-core/src/dbgpt/storage/base.py
+++ b/packages/dbgpt-core/src/dbgpt/storage/base.py
@@ -1,5 +1,6 @@
 """Index store base class."""
 
+import asyncio
 import logging
 import time
 from abc import ABC, abstractmethod
@@ -182,9 +183,7 @@ class IndexStoreBase(ABC):
         for chunk_group in chunk_groups:
             tasks.append(self.aload_document(chunk_group))
 
-        import asyncio
-
-        results = await asyncio.gather(*tasks)
+        results = await self._run_tasks_with_concurrency(tasks, max_threads)
 
         ids = []
         loaded_cnt = 0
@@ -195,6 +194,14 @@ class IndexStoreBase(ABC):
 
         return ids
 
+    async def _run_tasks_with_concurrency(self, tasks, max_concurrent):
+        results = []
+        for i in range(0, len(tasks), max_concurrent):
+            batch = tasks[i : i + max_concurrent]
+            batch_results = await asyncio.gather(*batch, return_exceptions=True)
+            results.extend(batch_results)
+        return results
+
     def similar_search(
         self, text: str, topk: int, filters: Optional[MetadataFilters] = None
     ) -> List[Chunk]:
diff --git a/packages/dbgpt-ext/src/dbgpt_ext/storage/vector_store/chroma_store.py b/packages/dbgpt-ext/src/dbgpt_ext/storage/vector_store/chroma_store.py
index 3520cc6d5..ef91ced42 100644
--- a/packages/dbgpt-ext/src/dbgpt_ext/storage/vector_store/chroma_store.py
+++ b/packages/dbgpt-ext/src/dbgpt_ext/storage/vector_store/chroma_store.py
@@ -278,12 +278,25 @@ class ChromaStore(VectorStoreBase):
             logger.error(f"Error during vector store deletion: {e}")
             raise
 
-    def delete_by_ids(self, ids):
-        """Delete vector by ids."""
-        logger.info(f"begin delete chroma ids: {ids}")
-        ids = ids.split(",")
-        if len(ids) > 0:
-            self._collection.delete(ids=ids)
+    def delete_by_ids(self, ids, batch_size: int = 1000):
+        """Delete vector by ids in batches.
+
+        Args:
+            ids (str): Comma-separated string of IDs to delete.
+            batch_size (int): Number of IDs per batch. Default is 1000.
+        """
+        logger.info(f"begin delete chroma ids in batches (batch size: {batch_size})")
+        id_list = ids.split(",")
+        total = len(id_list)
+        logger.info(f"Total IDs to delete: {total}")
+
+        for i in range(0, total, batch_size):
+            batch_ids = id_list[i : i + batch_size]
+            logger.info(f"Deleting batch {i // batch_size + 1}: {len(batch_ids)} IDs")
+            try:
+                self._collection.delete(ids=batch_ids)
+            except Exception as e:
+                logger.error(f"Failed to delete batch starting at index {i}: {e}")
 
     def truncate(self) -> List[str]:
         """Truncate data index_name."""