DB-GPT/dbgpt/datasource/rdbms/base.py
2024-08-05 19:26:39 +08:00

638 lines
23 KiB
Python

"""Base class for RDBMS connectors."""
from __future__ import annotations
import logging
import re
from typing import Any, Dict, Iterable, List, Optional, Set, Tuple, cast
from urllib.parse import quote
from urllib.parse import quote_plus as urlquote
import sqlalchemy
import sqlparse
from sqlalchemy import MetaData, Table, create_engine, inspect, select, text
from sqlalchemy.engine import CursorResult
from sqlalchemy.exc import ProgrammingError, SQLAlchemyError
from sqlalchemy.orm import scoped_session, sessionmaker
from sqlalchemy.schema import CreateTable
from dbgpt.datasource.base import BaseConnector
from dbgpt.storage.schema import DBType
logger = logging.getLogger(__name__)
def _format_index(index: sqlalchemy.engine.interfaces.ReflectedIndex) -> str:
return (
f'Name: {index["name"]}, Unique: {index["unique"]},'
f' Columns: {str(index["column_names"])}'
)
class RDBMSConnector(BaseConnector):
"""SQLAlchemy wrapper around a database."""
def __init__(
self,
engine,
schema: Optional[str] = None,
metadata: Optional[MetaData] = None,
ignore_tables: Optional[List[str]] = None,
include_tables: Optional[List[str]] = None,
sample_rows_in_table_info: int = 3,
indexes_in_table_info: bool = False,
custom_table_info: Optional[Dict[str, str]] = None,
view_support: bool = False,
):
"""Create engine from database URI.
Args:
- engine: Engine sqlalchemy.engine
- schema: Optional[str].
- metadata: Optional[MetaData]
- ignore_tables: Optional[List[str]]
- include_tables: Optional[List[str]]
- sample_rows_in_table_info: int default:3,
- indexes_in_table_info: bool = False,
- custom_table_info: Optional[dict] = None,
- view_support: bool = False,
"""
self._engine = engine
self._schema = schema
if include_tables and ignore_tables:
raise ValueError("Cannot specify both include_tables and ignore_tables")
if not custom_table_info:
custom_table_info = {}
self._inspector = inspect(engine)
session_factory = sessionmaker(bind=engine)
Session_Manages = scoped_session(session_factory)
self._db_sessions = Session_Manages
self.session = self.get_session()
self.view_support = view_support
self._usable_tables: Set[str] = set()
self._include_tables: Set[str] = set()
self._ignore_tables: Set[str] = set()
self._custom_table_info = custom_table_info
self._sample_rows_in_table_info = sample_rows_in_table_info
self._indexes_in_table_info = indexes_in_table_info
self._metadata = metadata or MetaData()
self._metadata.reflect(bind=self._engine)
self._all_tables: Set[str] = cast(Set[str], self._sync_tables_from_db())
@classmethod
def from_uri_db(
cls,
host: str,
port: int,
user: str,
pwd: str,
db_name: str,
engine_args: Optional[dict] = None,
**kwargs: Any,
) -> RDBMSConnector:
"""Construct a SQLAlchemy engine from uri database.
Args:
host (str): database host.
port (int): database port.
user (str): database user.
pwd (str): database password.
db_name (str): database name.
engine_args (Optional[dict]):other engine_args.
"""
db_url: str = (
f"{cls.driver}://{quote(user)}:{urlquote(pwd)}@{host}:{str(port)}/{db_name}"
)
return cls.from_uri(db_url, engine_args, **kwargs)
@classmethod
def from_uri(
cls, database_uri: str, engine_args: Optional[dict] = None, **kwargs: Any
) -> RDBMSConnector:
"""Construct a SQLAlchemy engine from URI."""
_engine_args = engine_args or {}
return cls(create_engine(database_uri, **_engine_args), **kwargs)
@property
def dialect(self) -> str:
"""Return string representation of dialect to use."""
return self._engine.dialect.name
def _sync_tables_from_db(self) -> Iterable[str]:
"""Read table information from database."""
# TODO Use a background thread to refresh periodically
# SQL will raise error with schema
_schema = (
None if self.db_type == DBType.SQLite.value() else self._engine.url.database
)
# including view support by adding the views as well as tables to the all
# tables list if view_support is True
self._all_tables = set(
self._inspector.get_table_names(schema=_schema)
+ (
self._inspector.get_view_names(schema=_schema)
if self.view_support
else []
)
)
return self._all_tables
def get_usable_table_names(self) -> Iterable[str]:
"""Get names of tables available."""
if self._include_tables:
return self._include_tables
return self._all_tables - self._ignore_tables
def get_table_names(self) -> Iterable[str]:
"""Get names of tables available."""
return self.get_usable_table_names()
def get_session(self):
"""Get session."""
session = self._db_sessions()
return session
def get_current_db_name(self) -> str:
"""Get current database name.
Returns:
str: database name
"""
return self.session.execute(text("SELECT DATABASE()")).scalar()
def table_simple_info(self):
"""Return table simple info."""
_sql = f"""
select concat(table_name, "(" , group_concat(column_name), ")")
as schema_info from information_schema.COLUMNS where
table_schema="{self.get_current_db_name()}" group by TABLE_NAME;
"""
cursor = self.session.execute(text(_sql))
results = cursor.fetchall()
return results
@property
def table_info(self) -> str:
"""Information about all tables in the database."""
return self.get_table_info()
def get_table_info(self, table_names: Optional[List[str]] = None) -> str:
"""Get information about specified tables.
Follows best practices as specified in: Rajkumar et al, 2022
(https://arxiv.org/abs/2204.00498)
If `sample_rows_in_table_info`, the specified number of sample rows will be
appended to each table description. This can increase performance as
demonstrated in the paper.
"""
all_table_names = self.get_usable_table_names()
if table_names is not None:
missing_tables = set(table_names).difference(all_table_names)
if missing_tables:
raise ValueError(f"table_names {missing_tables} not found in database")
all_table_names = table_names
meta_tables = [
tbl
for tbl in self._metadata.sorted_tables
if tbl.name in set(all_table_names)
and not (self.dialect == "sqlite" and tbl.name.startswith("sqlite_"))
]
tables = []
for table in meta_tables:
if self._custom_table_info and table.name in self._custom_table_info:
tables.append(self._custom_table_info[table.name])
continue
# add create table command
create_table = str(CreateTable(table).compile(self._engine))
table_info = f"{create_table.rstrip()}"
has_extra_info = (
self._indexes_in_table_info or self._sample_rows_in_table_info
)
if has_extra_info:
table_info += "\n\n/*"
if self._indexes_in_table_info:
table_info += f"\n{self._get_table_indexes(table)}\n"
if self._sample_rows_in_table_info:
table_info += f"\n{self._get_sample_rows(table)}\n"
if has_extra_info:
table_info += "*/"
tables.append(table_info)
final_str = "\n\n".join(tables)
return final_str
def get_columns(self, table_name: str) -> List[Dict]:
"""Get columns about specified table.
Args:
table_name (str): table name
Returns:
columns: List[Dict], which contains name: str, type: str,
default_expression: str, is_in_primary_key: bool, comment: str
eg:[{'name': 'id', 'type': 'int', 'default_expression': '',
'is_in_primary_key': True, 'comment': 'id'}, ...]
"""
return self._inspector.get_columns(table_name)
def _get_sample_rows(self, table: Table) -> str:
# build the select command
command = select(table).limit(self._sample_rows_in_table_info)
# save the columns in string format
columns_str = "\t".join([col.name for col in table.columns])
try:
# get the sample rows
with self._engine.connect() as connection:
sample_rows_result: CursorResult = connection.execute(command)
# shorten values in the sample rows
sample_rows = list(
map(lambda ls: [str(i)[:100] for i in ls], sample_rows_result)
)
# save the sample rows in string format
sample_rows_str = "\n".join(["\t".join(row) for row in sample_rows])
# in some dialects when there are no rows in the table a
# 'ProgrammingError' is returned
except ProgrammingError:
sample_rows_str = ""
return (
f"{self._sample_rows_in_table_info} rows from {table.name} table:\n"
f"{columns_str}\n"
f"{sample_rows_str}"
)
def _get_table_indexes(self, table: Table) -> str:
indexes = self._inspector.get_indexes(table.name)
indexes_formatted = "\n".join(map(_format_index, indexes))
return f"Table Indexes:\n{indexes_formatted}"
def get_table_info_no_throw(self, table_names: Optional[List[str]] = None) -> str:
"""Get information about specified tables."""
try:
return self.get_table_info(table_names)
except ValueError as e:
"""Format the error message"""
return f"Error: {e}"
def _write(self, write_sql: str):
"""Run a SQL write command and return the results as a list of tuples.
Args:
write_sql (str): SQL write command to run
"""
logger.info(f"Write[{write_sql}]")
db_cache = self._engine.url.database
result = self.session.execute(text(write_sql))
self.session.commit()
# TODO Subsequent optimization of dynamically specified database submission
# loss target problem
self.session.execute(text(f"use `{db_cache}`"))
logger.info(f"SQL[{write_sql}], result:{result.rowcount}")
return result.rowcount
def _query(self, query: str, fetch: str = "all"):
"""Run a SQL query and return the results as a list of tuples.
Args:
query (str): SQL query to run
fetch (str): fetch type
"""
result: List[Any] = []
logger.info(f"Query[{query}]")
if not query:
return result
cursor = self.session.execute(text(query))
if cursor.returns_rows:
if fetch == "all":
result = cursor.fetchall()
elif fetch == "one":
result = [cursor.fetchone()]
else:
raise ValueError("Fetch parameter must be either 'one' or 'all'")
field_names = tuple(i[0:] for i in cursor.keys())
result.insert(0, field_names)
return result
def query_table_schema(self, table_name: str):
"""Query table schema.
Args:
table_name (str): table name
"""
sql = f"select * from {table_name} limit 1"
return self._query(sql)
def query_ex(self, query: str, fetch: str = "all"):
"""Execute a SQL command and return the results.
Only for query command.
Args:
query (str): SQL query to run
fetch (str): fetch type
Returns:
List: result list
"""
logger.info(f"Query[{query}]")
if not query:
return [], None
cursor = self.session.execute(text(query))
if cursor.returns_rows:
if fetch == "all":
result = cursor.fetchall()
elif fetch == "one":
result = cursor.fetchone() # type: ignore
else:
raise ValueError("Fetch parameter must be either 'one' or 'all'")
field_names = list(cursor.keys())
result = list(result)
return field_names, result
return [], None
def run(self, command: str, fetch: str = "all") -> List:
"""Execute a SQL command and return a string representing the results."""
logger.info("SQL:" + command)
if not command or len(command) < 0:
return []
parsed, ttype, sql_type, table_name = self.__sql_parse(command)
if ttype == sqlparse.tokens.DML:
if sql_type == "SELECT":
return self._query(command, fetch)
else:
self._write(command)
select_sql = self.convert_sql_write_to_select(command)
logger.info(f"write result query:{select_sql}")
return self._query(select_sql)
else:
logger.info(
"DDL execution determines whether to enable through configuration "
)
cursor = self.session.execute(text(command))
self.session.commit()
if cursor.returns_rows:
result = cursor.fetchall()
field_names = tuple(i[0:] for i in cursor.keys())
result = list(result)
result.insert(0, field_names)
logger.info("DDL Result:" + str(result))
if not result:
# return self._query(f"SHOW COLUMNS FROM {table_name}")
return self.get_simple_fields(table_name)
return result
else:
return self.get_simple_fields(table_name)
def run_to_df(self, command: str, fetch: str = "all"):
"""Execute sql command and return result as dataframe."""
import pandas as pd
# Pandas has too much dependence and the import time is too long
# TODO: Remove the dependency on pandas
result_lst = self.run(command, fetch)
colunms = result_lst[0]
values = result_lst[1:]
return pd.DataFrame(values, columns=colunms)
def run_no_throw(self, command: str, fetch: str = "all") -> List:
"""Execute a SQL command and return a string representing the results.
If the statement returns rows, a string of the results is returned.
If the statement returns no rows, an empty string is returned.
If the statement throws an error, the error message is returned.
"""
try:
return self.run(command, fetch)
except SQLAlchemyError as e:
"""Format the error message"""
logger.warning(f"Run SQL command failed: {e}")
return []
def convert_sql_write_to_select(self, write_sql: str) -> str:
"""Convert SQL write command to a SELECT command.
SQL classification processing
author:xiangh8
Examples:
.. code-block:: python
write_sql = "insert into test(id) values (1)"
select_sql = convert_sql_write_to_select(write_sql)
print(select_sql)
# SELECT * FROM test WHERE id=1
Args:
write_sql (str): SQL write command
Returns:
str: SELECT command corresponding to the write command
"""
# Convert the SQL command to lowercase and split by space
parts = write_sql.lower().split()
# Get the command type (insert, delete, update)
cmd_type = parts[0]
# Handle according to command type
if cmd_type == "insert":
match = re.match(
r"insert\s+into\s+(\w+)\s*\(([^)]+)\)\s*values\s*\(([^)]+)\)",
write_sql.lower(),
)
if match:
# Get the table name, columns, and values
table_name, columns, values = match.groups()
columns = columns.split(",")
values = values.split(",")
# Build the WHERE clause
where_clause = " AND ".join(
[
f"{col.strip()}={val.strip()}"
for col, val in zip(columns, values)
]
)
return f"SELECT * FROM {table_name} WHERE {where_clause}"
else:
raise ValueError(f"Unsupported SQL command: {write_sql}")
elif cmd_type == "delete":
table_name = parts[2] # delete from <table_name> ...
# Return a SELECT statement that selects all data from the table
return f"SELECT * FROM {table_name} "
elif cmd_type == "update":
table_name = parts[1]
set_idx = parts.index("set")
where_idx = parts.index("where")
# Get the field name in the `set` clause
set_clause = parts[set_idx + 1 : where_idx][0].split("=")[0].strip()
# Get the condition statement after the `where`
where_clause = " ".join(parts[where_idx + 1 :])
# Return a SELECT statement that selects the updated data
return f"SELECT {set_clause} FROM {table_name} WHERE {where_clause}"
else:
raise ValueError(f"Unsupported SQL command type: {cmd_type}")
def __sql_parse(self, sql):
sql = sql.strip()
parsed = sqlparse.parse(sql)[0]
sql_type = parsed.get_type()
if sql_type == "CREATE":
table_name = self._extract_table_name_from_ddl(parsed)
else:
table_name = parsed.get_name()
first_token = parsed.token_first(skip_ws=True, skip_cm=False)
ttype = first_token.ttype
logger.info(
f"SQL:{sql}, ttype:{ttype}, sql_type:{sql_type}, table:{table_name}"
)
return parsed, ttype, sql_type, table_name
def _extract_table_name_from_ddl(self, parsed):
"""Extract table name from CREATE TABLE statement.""" ""
for token in parsed.tokens:
if token.ttype is None and isinstance(token, sqlparse.sql.Identifier):
return token.get_real_name()
return None
def get_indexes(self, table_name: str) -> List[Dict]:
"""Get table indexes about specified table.
Args:
table_name:(str) table name
Returns:
List[Dict]:eg:[{'name': 'idx_key', 'column_names': ['id']}]
"""
return self._inspector.get_indexes(table_name)
def get_show_create_table(self, table_name):
"""Get table show create table about specified table."""
session = self._db_sessions()
cursor = session.execute(text(f"SHOW CREATE TABLE {table_name}"))
ans = cursor.fetchall()
return ans[0][1]
def get_fields(self, table_name, db_name=None) -> List[Tuple]:
"""Get column fields about specified table."""
session = self._db_sessions()
query = (
"SELECT COLUMN_NAME, COLUMN_TYPE, COLUMN_DEFAULT, IS_NULLABLE, "
"COLUMN_COMMENT from information_schema.COLUMNS where "
f"table_name='{table_name}'"
)
if db_name is not None:
query += f" AND table_schema='{db_name}'"
cursor = session.execute(text(query))
fields = cursor.fetchall()
return [(field[0], field[1], field[2], field[3], field[4]) for field in fields]
def get_simple_fields(self, table_name):
"""Get column fields about specified table."""
return self._query(f"SHOW COLUMNS FROM {table_name}")
def get_charset(self) -> str:
"""Get character_set."""
session = self._db_sessions()
cursor = session.execute(text("SELECT @@character_set_database"))
character_set = cursor.fetchone()[0] # type: ignore
return character_set
def get_collation(self):
"""Get collation."""
session = self._db_sessions()
cursor = session.execute(text("SELECT @@collation_database"))
collation = cursor.fetchone()[0]
return collation
def get_grants(self):
"""Get grant info."""
session = self._db_sessions()
cursor = session.execute(text("SHOW GRANTS"))
grants = cursor.fetchall()
return grants
def get_users(self):
"""Get user info."""
try:
cursor = self.session.execute(text("SELECT user, host FROM mysql.user"))
users = cursor.fetchall()
return [(user[0], user[1]) for user in users]
except Exception:
return []
def get_table_comments(self, db_name: str):
"""Return table comments."""
cursor = self.session.execute(
text(
f"""SELECT table_name, table_comment FROM information_schema.tables
WHERE table_schema = '{db_name}'""".format(
db_name
)
)
)
table_comments = cursor.fetchall()
return [
(table_comment[0], table_comment[1]) for table_comment in table_comments
]
def get_table_comment(self, table_name: str) -> Dict:
"""Get table comments.
Args:
table_name (str): table name
Returns:
comment: Dict, which contains text: Optional[str], eg:["text": "comment"]
"""
return self._inspector.get_table_comment(table_name)
def get_column_comments(self, db_name: str, table_name: str):
"""Return column comments."""
cursor = self.session.execute(
text(
f"""SELECT column_name, column_comment FROM information_schema.columns
WHERE table_schema = '{db_name}' and table_name = '{table_name}'
""".format(
db_name, table_name
)
)
)
column_comments = cursor.fetchall()
return [
(column_comment[0], column_comment[1]) for column_comment in column_comments
]
def get_database_names(self) -> List[str]:
"""Return a list of database names available in the database.
Returns:
List[str]: database list
"""
session = self._db_sessions()
cursor = session.execute(text(" show databases;"))
results = cursor.fetchall()
return [
d[0]
for d in results
if d[0] not in ["information_schema", "performance_schema", "sys", "mysql"]
]