Files
langchain/libs/partners/mongodb/langchain_mongodb/vectorstores.py
Jib c0fcf76e93 LangChain-MongoDB: [Experimental] Driver-side index creation helper (#19359)
## Description
Created a helper method to make vector search indexes via client-side
pymongo.

**Recent Update** -- Removed error suppressing/overwriting layer in
favor of letting the original exception provide information.

## ToDo's
- [x] Make _wait_untils for integration test delete index
functionalities.
- [x] Add documentation for its use. Highlight it's experimental
- [x] Post Integration Test Results in a screenshot
- [x] Get review from MongoDB internal team (@shaneharvey, @blink1073 ,
@NoahStapp , @caseyclements)



- [x] **Add tests and docs**: If you're adding a new integration, please
include
1. Added new integration tests. Not eligible for unit testing since the
operation is Atlas Cloud specific.
2. an example notebook showing its use. It lives in
`docs/docs/integrations` directory.

![image](https://github.com/langchain-ai/langchain/assets/2887713/a3fc8ee1-e04c-4976-accc-fea0eeae028a)


- [x] **Lint and test**: Run `make format`, `make lint` and `make test`
from the root of the package(s) you've modified. See contribution
guidelines for more: https://python.langchain.com/docs/contributing/
2024-06-26 15:07:28 -04:00

536 lines
19 KiB
Python

from __future__ import annotations
import logging
from importlib.metadata import version
from typing import (
Any,
Callable,
Dict,
Generator,
Iterable,
List,
Optional,
Tuple,
TypeVar,
Union,
)
import numpy as np
from bson import ObjectId, json_util
from langchain_core.documents import Document
from langchain_core.embeddings import Embeddings
from langchain_core.runnables.config import run_in_executor
from langchain_core.vectorstores import VectorStore
from pymongo import MongoClient
from pymongo.collection import Collection
from pymongo.driver_info import DriverInfo
from pymongo.errors import CollectionInvalid
from langchain_mongodb.index import (
create_vector_search_index,
update_vector_search_index,
)
from langchain_mongodb.utils import maximal_marginal_relevance
MongoDBDocumentType = TypeVar("MongoDBDocumentType", bound=Dict[str, Any])
VST = TypeVar("VST", bound=VectorStore)
logger = logging.getLogger(__name__)
DEFAULT_INSERT_BATCH_SIZE = 100_000
class MongoDBAtlasVectorSearch(VectorStore):
"""`MongoDB Atlas Vector Search` vector store.
To use, you should have both:
- the ``pymongo`` python package installed
- a connection string associated with a MongoDB Atlas Cluster having deployed an
Atlas Search index
Example:
.. code-block:: python
from langchain_mongodb import MongoDBAtlasVectorSearch
from langchain_openai import OpenAIEmbeddings
from pymongo import MongoClient
mongo_client = MongoClient("<YOUR-CONNECTION-STRING>")
collection = mongo_client["<db_name>"]["<collection_name>"]
embeddings = OpenAIEmbeddings()
vectorstore = MongoDBAtlasVectorSearch(collection, embeddings)
"""
def __init__(
self,
collection: Collection[MongoDBDocumentType],
embedding: Embeddings,
*,
index_name: str = "default",
text_key: str = "text",
embedding_key: str = "embedding",
relevance_score_fn: str = "cosine",
):
"""
Args:
collection: MongoDB collection to add the texts to.
embedding: Text embedding model to use.
text_key: MongoDB field that will contain the text for each
document.
defaults to 'text'
embedding_key: MongoDB field that will contain the embedding for
each document.
defaults to 'embedding'
index_name: Name of the Atlas Search index.
defaults to 'default'
relevance_score_fn: The similarity score used for the index.
defaults to 'cosine'
Currently supported: 'euclidean', 'cosine', and 'dotProduct'.
"""
self._collection = collection
self._embedding = embedding
self._index_name = index_name
self._text_key = text_key
self._embedding_key = embedding_key
self._relevance_score_fn = relevance_score_fn
@property
def embeddings(self) -> Embeddings:
return self._embedding
def _select_relevance_score_fn(self) -> Callable[[float], float]:
scoring: dict[str, Callable] = {
"euclidean": self._euclidean_relevance_score_fn,
"dotProduct": self._max_inner_product_relevance_score_fn,
"cosine": self._cosine_relevance_score_fn,
}
if self._relevance_score_fn in scoring:
return scoring[self._relevance_score_fn]
else:
raise NotImplementedError(
f"No relevance score function for ${self._relevance_score_fn}"
)
@classmethod
def from_connection_string(
cls,
connection_string: str,
namespace: str,
embedding: Embeddings,
**kwargs: Any,
) -> MongoDBAtlasVectorSearch:
"""Construct a `MongoDB Atlas Vector Search` vector store
from a MongoDB connection URI.
Args:
connection_string: A valid MongoDB connection URI.
namespace: A valid MongoDB namespace (database and collection).
embedding: The text embedding model to use for the vector store.
Returns:
A new MongoDBAtlasVectorSearch instance.
"""
client: MongoClient = MongoClient(
connection_string,
driver=DriverInfo(name="Langchain", version=version("langchain")),
)
db_name, collection_name = namespace.split(".")
collection = client[db_name][collection_name]
return cls(collection, embedding, **kwargs)
def add_texts(
self,
texts: Iterable[str],
metadatas: Optional[List[Dict[str, Any]]] = None,
**kwargs: Any,
) -> List:
"""Run more texts through the embeddings and add to the vectorstore.
Args:
texts: Iterable of strings to add to the vectorstore.
metadatas: Optional list of metadatas associated with the texts.
Returns:
List of ids from adding the texts into the vectorstore.
"""
batch_size = kwargs.get("batch_size", DEFAULT_INSERT_BATCH_SIZE)
_metadatas: Union[List, Generator] = metadatas or ({} for _ in texts)
texts_batch = texts
metadatas_batch = _metadatas
result_ids = []
if batch_size:
texts_batch = []
metadatas_batch = []
size = 0
for i, (text, metadata) in enumerate(zip(texts, _metadatas)):
size += len(text) + len(metadata)
texts_batch.append(text)
metadatas_batch.append(metadata)
if (i + 1) % batch_size == 0 or size >= 47_000_000:
result_ids.extend(self._insert_texts(texts_batch, metadatas_batch))
texts_batch = []
metadatas_batch = []
size = 0
if texts_batch:
result_ids.extend(self._insert_texts(texts_batch, metadatas_batch)) # type: ignore
return result_ids
def _insert_texts(self, texts: List[str], metadatas: List[Dict[str, Any]]) -> List:
if not texts:
return []
# Embed and create the documents
embeddings = self._embedding.embed_documents(texts)
to_insert = [
{self._text_key: t, self._embedding_key: embedding, **m}
for t, m, embedding in zip(texts, metadatas, embeddings)
]
# insert the documents in MongoDB Atlas
insert_result = self._collection.insert_many(to_insert) # type: ignore
return insert_result.inserted_ids
def _similarity_search_with_score(
self,
embedding: List[float],
k: int = 4,
pre_filter: Optional[Dict] = None,
post_filter_pipeline: Optional[List[Dict]] = None,
include_embedding: bool = False,
**kwargs: Any,
) -> List[Tuple[Document, float]]:
params = {
"queryVector": embedding,
"path": self._embedding_key,
"numCandidates": k * 10,
"limit": k,
"index": self._index_name,
}
if pre_filter:
params["filter"] = pre_filter
query = {"$vectorSearch": params}
pipeline = [
query,
{"$set": {"score": {"$meta": "vectorSearchScore"}}},
]
# Exclude the embedding key from the return payload
if not include_embedding:
pipeline.append({"$project": {self._embedding_key: 0}})
if post_filter_pipeline is not None:
pipeline.extend(post_filter_pipeline)
cursor = self._collection.aggregate(pipeline) # type: ignore[arg-type]
docs = []
def _make_serializable(obj: Dict[str, Any]) -> None:
for k, v in obj.items():
if isinstance(v, dict):
_make_serializable(v)
elif isinstance(v, list) and v and isinstance(v[0], ObjectId):
obj[k] = [json_util.default(item) for item in v]
elif isinstance(v, ObjectId):
obj[k] = json_util.default(v)
for res in cursor:
text = res.pop(self._text_key)
score = res.pop("score")
# Make every ObjectId found JSON-Serializable
# following format used in bson.json_util.loads
# e.g. loads('{"_id": {"$oid": "664..."}}') == {'_id': ObjectId('664..')} # noqa: E501
_make_serializable(res)
docs.append((Document(page_content=text, metadata=res), score))
return docs
def similarity_search_with_score(
self,
query: str,
k: int = 4,
pre_filter: Optional[Dict] = None,
post_filter_pipeline: Optional[List[Dict]] = None,
**kwargs: Any,
) -> List[Tuple[Document, float]]:
"""Return MongoDB documents most similar to the given query and their scores.
Uses the vectorSearch operator available in MongoDB Atlas Search.
For more: https://www.mongodb.com/docs/atlas/atlas-vector-search/vector-search-stage/
Args:
query: Text to look up documents similar to.
k: (Optional) number of documents to return. Defaults to 4.
pre_filter: (Optional) dictionary of argument(s) to prefilter document
fields on.
post_filter_pipeline: (Optional) Pipeline of MongoDB aggregation stages
following the vectorSearch stage.
Returns:
List of documents most similar to the query and their scores.
"""
embedding = self._embedding.embed_query(query)
docs = self._similarity_search_with_score(
embedding,
k=k,
pre_filter=pre_filter,
post_filter_pipeline=post_filter_pipeline,
**kwargs,
)
return docs
def similarity_search(
self,
query: str,
k: int = 4,
pre_filter: Optional[Dict] = None,
post_filter_pipeline: Optional[List[Dict]] = None,
**kwargs: Any,
) -> List[Document]:
"""Return MongoDB documents most similar to the given query.
Uses the vectorSearch operator available in MongoDB Atlas Search.
For more: https://www.mongodb.com/docs/atlas/atlas-vector-search/vector-search-stage/
Args:
query: Text to look up documents similar to.
k: (Optional) number of documents to return. Defaults to 4.
pre_filter: (Optional) dictionary of argument(s) to prefilter document
fields on.
post_filter_pipeline: (Optional) Pipeline of MongoDB aggregation stages
following the vectorSearch stage.
Returns:
List of documents most similar to the query and their scores.
"""
additional = kwargs.get("additional")
docs_and_scores = self.similarity_search_with_score(
query,
k=k,
pre_filter=pre_filter,
post_filter_pipeline=post_filter_pipeline,
**kwargs,
)
if additional and "similarity_score" in additional:
for doc, score in docs_and_scores:
doc.metadata["score"] = score
return [doc for doc, _ in docs_and_scores]
def max_marginal_relevance_search(
self,
query: str,
k: int = 4,
fetch_k: int = 20,
lambda_mult: float = 0.5,
pre_filter: Optional[Dict] = None,
post_filter_pipeline: Optional[List[Dict]] = None,
**kwargs: Any,
) -> List[Document]:
"""Return documents selected using the maximal marginal relevance.
Maximal marginal relevance optimizes for similarity to query AND diversity
among selected documents.
Args:
query: Text to look up documents similar to.
k: (Optional) number of documents to return. Defaults to 4.
fetch_k: (Optional) number of documents to fetch before passing to MMR
algorithm. Defaults to 20.
lambda_mult: Number between 0 and 1 that determines the degree
of diversity among the results with 0 corresponding
to maximum diversity and 1 to minimum diversity.
Defaults to 0.5.
pre_filter: (Optional) dictionary of argument(s) to prefilter on document
fields.
post_filter_pipeline: (Optional) pipeline of MongoDB aggregation stages
following the vectorSearch stage.
Returns:
List of documents selected by maximal marginal relevance.
"""
query_embedding = self._embedding.embed_query(query)
return self.max_marginal_relevance_search_by_vector(
embedding=query_embedding,
k=k,
fetch_k=fetch_k,
lambda_mult=lambda_mult,
pre_filter=pre_filter,
post_filter_pipeline=post_filter_pipeline,
**kwargs,
)
@classmethod
def from_texts(
cls,
texts: List[str],
embedding: Embeddings,
metadatas: Optional[List[Dict]] = None,
collection: Optional[Collection[MongoDBDocumentType]] = None,
**kwargs: Any,
) -> MongoDBAtlasVectorSearch:
"""Construct a `MongoDB Atlas Vector Search` vector store from raw documents.
This is a user-friendly interface that:
1. Embeds documents.
2. Adds the documents to a provided MongoDB Atlas Vector Search index
(Lucene)
This is intended to be a quick way to get started.
Example:
.. code-block:: python
from pymongo import MongoClient
from langchain_mongodb import MongoDBAtlasVectorSearch
from langchain_openai import OpenAIEmbeddings
mongo_client = MongoClient("<YOUR-CONNECTION-STRING>")
collection = mongo_client["<db_name>"]["<collection_name>"]
embeddings = OpenAIEmbeddings()
vectorstore = MongoDBAtlasVectorSearch.from_texts(
texts,
embeddings,
metadatas=metadatas,
collection=collection
)
"""
if collection is None:
raise ValueError("Must provide 'collection' named parameter.")
vectorstore = cls(collection, embedding, **kwargs)
vectorstore.add_texts(texts, metadatas=metadatas)
return vectorstore
def delete(self, ids: Optional[List[str]] = None, **kwargs: Any) -> Optional[bool]:
"""Delete by ObjectId or other criteria.
Args:
ids: List of ids to delete.
**kwargs: Other keyword arguments that subclasses might use.
Returns:
Optional[bool]: True if deletion is successful,
False otherwise, None if not implemented.
"""
search_params: dict[str, Any] = {}
if ids:
search_params[self._text_key]["$in"] = ids
return self._collection.delete_many({**search_params, **kwargs}).acknowledged
async def adelete(
self, ids: Optional[List[str]] = None, **kwargs: Any
) -> Optional[bool]:
"""Delete by vector ID or other criteria.
Args:
ids: List of ids to delete.
**kwargs: Other keyword arguments that subclasses might use.
Returns:
Optional[bool]: True if deletion is successful,
False otherwise, None if not implemented.
"""
return await run_in_executor(None, self.delete, ids=ids, **kwargs)
def max_marginal_relevance_search_by_vector(
self,
embedding: List[float],
k: int = 4,
fetch_k: int = 20,
lambda_mult: float = 0.5,
pre_filter: Optional[Dict] = None,
post_filter_pipeline: Optional[List[Dict]] = None,
**kwargs: Any,
) -> List[Document]: # type: ignore
"""Return docs selected using the maximal marginal relevance.
Maximal marginal relevance optimizes for similarity to query AND diversity
among selected documents.
Args:
embedding: Embedding to look up documents similar to.
k: Number of Documents to return. Defaults to 4.
fetch_k: Number of Documents to fetch to pass to MMR algorithm.
lambda_mult: Number between 0 and 1 that determines the degree
of diversity among the results with 0 corresponding
to maximum diversity and 1 to minimum diversity.
Defaults to 0.5.
pre_filter: (Optional) dictionary of argument(s) to prefilter on document
fields.
post_filter_pipeline: (Optional) pipeline of MongoDB aggregation stages
following the vectorSearch stage.
Returns:
List of Documents selected by maximal marginal relevance.
"""
docs = self._similarity_search_with_score(
embedding,
k=fetch_k,
pre_filter=pre_filter,
post_filter_pipeline=post_filter_pipeline,
include_embedding=kwargs.pop("include_embedding", True),
**kwargs,
)
mmr_doc_indexes = maximal_marginal_relevance(
np.array(embedding),
[doc.metadata[self._embedding_key] for doc, _ in docs],
k=k,
lambda_mult=lambda_mult,
)
mmr_docs = [docs[i][0] for i in mmr_doc_indexes]
return mmr_docs
async def amax_marginal_relevance_search_by_vector(
self,
embedding: List[float],
k: int = 4,
fetch_k: int = 20,
lambda_mult: float = 0.5,
**kwargs: Any,
) -> List[Document]:
"""Return docs selected using the maximal marginal relevance."""
return await run_in_executor(
None,
self.max_marginal_relevance_search_by_vector,
embedding,
k=k,
fetch_k=fetch_k,
lambda_mult=lambda_mult,
**kwargs,
)
def create_vector_search_index(
self,
dimensions: int,
filters: Optional[List[Dict[str, str]]] = None,
update: bool = False,
) -> None:
"""Creates a MongoDB Atlas vectorSearch index for the VectorStore
Note**: This method may fail as it requires a MongoDB Atlas with
these pre-requisites:
- M10 cluster or higher
- https://www.mongodb.com/docs/atlas/atlas-vector-search/create-index/#prerequisites
Args:
dimensions (int): Number of dimensions in embedding
filters (Optional[List[Dict[str, str]]], optional): additional filters
for index definition.
Defaults to None.
update (bool, optional): Updates existing vectorSearch index.
Defaults to False.
"""
try:
self._collection.database.create_collection(self._collection.name)
except CollectionInvalid:
pass
index_operation = (
update_vector_search_index if update else create_vector_search_index
)
index_operation(
collection=self._collection,
index_name=self._index_name,
dimensions=dimensions,
path=self._embedding_key,
similarity=self._relevance_score_fn,
filters=filters or [],
)