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Author	SHA1	Message	Date
oahzxl	fd87d78a28	rename ambiguous variable	2023-01-06 14:28:04 +08:00
oahzxl	2bde9d2b7f	code format	2023-01-06 14:21:49 +08:00
oahzxl	8a634af2f5	close mem and code print	2023-01-06 14:19:45 +08:00
oahzxl	1a6d2a740b	take apart chunk code gen	2023-01-06 14:14:45 +08:00
oahzxl	d1f0773182	rename	2023-01-06 11:48:33 +08:00
oahzxl	06a5355d98	update test	2023-01-06 11:44:01 +08:00
oahzxl	efb1c64c30	restruct dir	2023-01-06 11:39:26 +08:00
oahzxl	27ab524096	refactor structure	2023-01-06 11:07:57 +08:00
oahzxl	71e72c4890	last version of benchmark	2023-01-05 17:54:25 +08:00
oahzxl	55cb713f36	update min memory stratege, reduce mem usage by 30%	2023-01-05 11:29:22 +08:00
oahzxl	9c5e028a62	fix bug again	2023-01-02 00:27:11 +08:00
oahzxl	7fd3b45af2	fix a bug in ones like, dont gen chunk if dim size is 1	2023-01-02 00:04:47 +08:00
oahzxl	5f24f4fd55	support ones_like, add prompt if fit mode search fail	2022-12-31 16:29:43 +08:00
oahzxl	80efd70c72	improve reorder efficeincy	2022-12-31 13:44:46 +08:00
oahzxl	966e4ea0cb	add reorder in mem estimator	2022-12-31 02:20:07 +08:00
oahzxl	e5a5fbb8a9	update source add	2022-12-31 01:00:06 +08:00
oahzxl	f5515e9978	use max_mem to control stratge	2022-12-29 16:55:47 +08:00
oahzxl	f7d8092c84	align openfold	2022-12-29 16:01:05 +08:00
oahzxl	5c4df01af3	update openfold	2022-12-29 15:54:08 +08:00
oahzxl	289f3a45c2	init openfold	2022-12-29 15:01:15 +08:00
oahzxl	efe6fe3a33	code style	2022-12-29 14:47:47 +08:00
oahzxl	7a23deb584	code style	2022-12-29 14:47:16 +08:00
oahzxl	5a916c0adb	add print	2022-12-29 14:42:29 +08:00
oahzxl	1d7ca02301	add benchmark	2022-12-29 14:28:38 +08:00
oahzxl	fff493c202	init openfold	2022-12-29 11:48:11 +08:00
oahzxl	69af93107f	add evoformer openfold init	2022-12-29 11:28:25 +08:00
oahzxl	cb2dd1a106	turn off print mem	2022-12-27 15:01:58 +08:00
oahzxl	a2b4755ce9	code style	2022-12-27 14:49:52 +08:00
oahzxl	6be89a3b82	add chunksize in emit, fix bug in reassgin shape	2022-12-27 14:48:25 +08:00
oahzxl	378a49dc6c	code style	2022-12-27 09:48:59 +08:00
oahzxl	8f5a0edfab	add chunk select	2022-12-26 23:08:49 +08:00
oahzxl	1b8a066592	add chunk select class	2022-12-26 15:28:01 +08:00
oahzxl	786a398a6b	code style	2022-12-23 17:42:51 +08:00
oahzxl	9b1b890347	update run	2022-12-23 17:32:11 +08:00
oahzxl	51ef8384c1	finish node reorder	2022-12-23 17:25:36 +08:00
oahzxl	884a228ea6	reorder nodes	2022-12-23 17:06:07 +08:00
oahzxl	e0ae68e736	code style	2022-12-23 15:49:04 +08:00
oahzxl	fa5e6fbf96	code style	2022-12-23 15:38:37 +08:00
oahzxl	4f5e105af3	remove flow tracer	2022-12-23 15:34:41 +08:00
oahzxl	4d89525fc2	remove abandoned function	2022-12-23 14:28:49 +08:00
oahzxl	49ba619085	code style	2022-12-23 14:26:43 +08:00
oahzxl	d309e9338b	adapt codegen to prepose node	2022-12-23 14:26:12 +08:00
oahzxl	522f017418	code style	2022-12-23 13:41:51 +08:00
oahzxl	774d34f1aa	refactor flow search	2022-12-23 13:41:10 +08:00
oahzxl	ded1005667	format code	2022-12-21 15:03:08 +08:00
oahzxl	d361d533e8	refactor flow tracer	2022-12-21 15:01:03 +08:00
oahzxl	d734529a39	move flow tracer	2022-12-21 15:00:24 +08:00
oahzxl	9d516fa68f	fix layernorm	2022-12-18 20:37:55 +08:00
oahzxl	e66a18a0bf	optimise search	2022-12-16 15:06:39 +08:00
oahzxl	e83e3c6154	update memory estimate	2022-12-16 11:09:35 +08:00